CRISPRone

CRISPRone report for GCA_000449845.1_ASM44984v1

♦ Seq 1: AVIP01000172.1 Clostridioides difficile 6041 gcd6041.contig.175, whole genome shotgun sequence

⇒Summary: seq-len = 1210 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 857-1144 bp Zoom in on locus 1 x5 CRISPR array Location: 857-1144 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 857-1144 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 857-1144 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVIP01000170.1 Clostridioides difficile 6041 gcd6041.contig.173, whole genome shotgun sequence

⇒Summary: seq-len = 950 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 856-950 bp Zoom in on locus 1 x2 CRISPR array Location: 856-950 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 856-950 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 856-950 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVIP01000043.1 Clostridioides difficile 6041 gcd6041.contig.43, whole genome shotgun sequence

⇒Summary: seq-len = 7282 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 64-5663 bp Zoom in on locus 1 x5 x4 x2 CRISPR array Location: 64-352 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 64-352 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 2995-3223 bp Num of repeats: 4 Spacers: s5-s7 CRISPR array Location: 2995-3223 bp Num of repeats: 4 Spacers: s5-s7 CRISPR array Location: 5570-5663 bp Num of repeats: 2 Spacers: s8-s8 CRISPR array Location: 5570-5663 bp Num of repeats: 2 Spacers: s8-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 64-352 bp]: array | spacers
           [Locus range 2995-3223 bp]: array | spacers
           [Locus range 5570-5663 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVIP01000118.1 Clostridioides difficile 6041 gcd6041.contig.121, whole genome shotgun sequence

⇒Summary: seq-len = 5220 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4208-4703 bp Zoom in on locus 1 x8 CRISPR array Location: 4208-4703 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 4208-4703 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4208-4703 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVIP01000112.1 Clostridioides difficile 6041 gcd6041.contig.115, whole genome shotgun sequence

⇒Summary: seq-len = 63832 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37457-37878 bp Zoom in on locus 1 x7 CRISPR array Location: 37457-37878 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 37457-37878 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 37457-37878 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVIP01000116.1 Clostridioides difficile 6041 gcd6041.contig.119, whole genome shotgun sequence

⇒Summary: seq-len = 63482 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28319-36184 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 28319-30727 bp Gene: cd09693:cas5 Type: Type-I Location: 30754-31551 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31567-32580 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32600-34075 bp Gene: pfam01881:cas6 Type: other Location: 34080-34817 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 35075-36184 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVIP01000065.1 Clostridioides difficile 6041 gcd6041.contig.67, whole genome shotgun sequence

⇒Summary: seq-len = 27964 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3185-3677 bp Zoom in on locus 1 x8 CRISPR array Location: 3185-3677 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3185-3677 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3185-3677 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVIP01000132.1 Clostridioides difficile 6041 gcd6041.contig.135, whole genome shotgun sequence

⇒Summary: seq-len = 66602 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1469-11582 bp Zoom in on locus 1 x9 CRISPR array Location: 1469-2017 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 1469-2017 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 2201-2467 bp Gene: cd09722:cas1 Type: universal Location: 2470-3450 bp Gene: pfam01930:cas4 Type: Type-I Location: 3534-3971 bp Gene: COG1203:cas3 Type: Type-I Location: 4019-6340 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 6351-7052 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 7054-7968 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 7970-9847 bp Gene: pfam01881:cas6 Type: other Location: 9853-10647 bp Gene: pfam13280:WYL Type: other Location: 10668-11582 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1469-2017 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVIP01000160.1 Clostridioides difficile 6041 gcd6041.contig.163, whole genome shotgun sequence

⇒Summary: seq-len = 448 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-356 bp Zoom in on locus 1 x6 CRISPR array Location: 2-356 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 2-356 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2-356 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVIP01000042.1 Clostridioides difficile 6041 gcd6041.contig.42, whole genome shotgun sequence

⇒Summary: seq-len = 3919 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3534-3827 bp Zoom in on locus 1 x5 CRISPR array Location: 3534-3827 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 3534-3827 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3534-3827 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVIP01000059.1 Clostridioides difficile 6041 gcd6041.contig.60, whole genome shotgun sequence

⇒Summary: seq-len = 82129 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22171-22659 bp Zoom in on locus 1 x8 CRISPR array Location: 22171-22659 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 22171-22659 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22171-22659 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: AVIP01000053.1 Clostridioides difficile 6041 gcd6041.contig.53, whole genome shotgun sequence

⇒Summary: seq-len = 78363 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59306-59467 bp Zoom in on locus 1 x3 CRISPR array Location: 59306-59467 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 59306-59467 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 59306-59467 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: AVIP01000071.1 Clostridioides difficile 6041 gcd6041.contig.73, whole genome shotgun sequence

⇒Summary: seq-len = 9835 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1916-3458 bp Zoom in on locus 1 x24 CRISPR array Location: 1916-3458 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 1916-3458 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1916-3458 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)