CRISPRone

CRISPRone report for GCA_000449865.2_ASM44986v2

♦ Seq 1: AVIQ01000274.1 Clostridioides difficile 6042 gcd6042.contig.279, whole genome shotgun sequence

⇒Summary: seq-len = 12402 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 258-12314 bp Zoom in on locus 1 x46 Gene: cd09725:cas2 Type: universal Location: 258-548 bp Gene: cd09722:cas1 Type: universal Location: 759-1766 bp Gene: pfam01930:cas4 Type: Type-I Location: 1792-2286 bp CRISPR array Location: 2371-5372 bp Num of repeats: 46 Spacers: s1-s45 CRISPR array Location: 2371-5372 bp Num of repeats: 46 Spacers: s1-s45 Gene: cd09641:cas3HD Type: Type-I Location: 5562-8120 bp Gene: cd09693:cas5 Type: Type-I Location: 8144-8884 bp Gene: pfam05107:cas7b Type: Type-I Location: 8886-9875 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 9868-11607 bp Gene: cd09652:cas6 Type: other Location: 11619-12314 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2371-5372 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVIQ01000310.1 Clostridioides difficile 6042 gcd6042.contig.316, whole genome shotgun sequence

⇒Summary: seq-len = 96401 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19479-27344 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 19479-21887 bp Gene: cd09693:cas5 Type: Type-I Location: 21914-22711 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 22727-23740 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 23760-25235 bp Gene: pfam01881:cas6 Type: other Location: 25240-25977 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 26235-27344 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVIQ01000177.1 Clostridioides difficile 6042 gcd6042.contig.180, whole genome shotgun sequence

⇒Summary: seq-len = 2806 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2292-2653 bp Zoom in on locus 1 x6 CRISPR array Location: 2292-2653 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 2292-2653 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2292-2653 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVIQ01000258.1 Clostridioides difficile 6042 gcd6042.contig.263, whole genome shotgun sequence

⇒Summary: seq-len = 39359 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35490-36240 bp Zoom in on locus 1 x12 CRISPR array Location: 35490-36240 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 35490-36240 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 35490-36240 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVIQ01000254.1 Clostridioides difficile 6042 gcd6042.contig.259, whole genome shotgun sequence

⇒Summary: seq-len = 11941 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3039-3266 bp Zoom in on locus 1 x4 CRISPR array Location: 3039-3266 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3039-3266 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3039-3266 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVIQ01000292.1 Clostridioides difficile 6042 gcd6042.contig.297, whole genome shotgun sequence

⇒Summary: seq-len = 58703 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4017-4574 bp Zoom in on locus 1 x9 CRISPR array Location: 4017-4574 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 4017-4574 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4017-4574 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVIQ01000146.1 Clostridioides difficile 6042 gcd6042.contig.148, whole genome shotgun sequence

⇒Summary: seq-len = 11601 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9441-9603 bp Zoom in on locus 1 x3 CRISPR array Location: 9441-9603 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 9441-9603 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9441-9603 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVIQ01000205.1 Clostridioides difficile 6042 gcd6042.contig.208, whole genome shotgun sequence

⇒Summary: seq-len = 9994 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6009-6429 bp Zoom in on locus 1 x7 CRISPR array Location: 6009-6429 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 6009-6429 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6009-6429 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVIQ01000108.1 Clostridioides difficile 6042 gcd6042.contig.110, whole genome shotgun sequence

⇒Summary: seq-len = 64221 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4512-4804 bp Zoom in on locus 1 x5 CRISPR array Location: 4512-4804 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 4512-4804 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4512-4804 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)