CRISPRone

CRISPRone report for GCA_000449885.2_ASM44988v2

♦ Seq 1: AVIR01000149.1 Clostridioides difficile 6057 gcd6057.contig.148, whole genome shotgun sequence

⇒Summary: seq-len = 12073 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5323-5684 bp Zoom in on locus 1 x6 CRISPR array Location: 5323-5684 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 5323-5684 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5323-5684 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVIR01000204.1 Clostridioides difficile 6057 gcd6057.contig.203, whole genome shotgun sequence

⇒Summary: seq-len = 36797 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23056-30921 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 23056-25464 bp Gene: cd09693:cas5 Type: Type-I Location: 25491-26288 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 26304-27317 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 27337-28812 bp Gene: pfam01881:cas6 Type: other Location: 28817-29554 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 29812-30921 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVIR01000170.1 Clostridioides difficile 6057 gcd6057.contig.169, whole genome shotgun sequence

⇒Summary: seq-len = 22447 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5435-5596 bp Zoom in on locus 1 x3 CRISPR array Location: 5435-5596 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5435-5596 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5435-5596 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVIR01000126.1 Clostridioides difficile 6057 gcd6057.contig.125, whole genome shotgun sequence

⇒Summary: seq-len = 15731 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2368-2661 bp Zoom in on locus 1 x5 CRISPR array Location: 2368-2661 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 2368-2661 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2368-2661 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVIR01000296.1 Clostridioides difficile 6057 gcd6057.contig.295, whole genome shotgun sequence

⇒Summary: seq-len = 12495 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 150-12206 bp Zoom in on locus 1 x46 Gene: cd09652:cas6 Type: other Location: 150-845 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 857-2596 bp Gene: pfam05107:cas7b Type: Type-I Location: 2589-3578 bp Gene: cd09693:cas5 Type: Type-I Location: 3580-4320 bp Gene: cd09641:cas3HD Type: Type-I Location: 4344-6902 bp CRISPR array Location: 7092-10094 bp Num of repeats: 46 Spacers: s1-s45 CRISPR array Location: 7092-10094 bp Num of repeats: 46 Spacers: s1-s45 Gene: pfam01930:cas4 Type: Type-I Location: 10178-10672 bp Gene: cd09722:cas1 Type: universal Location: 10698-11705 bp Gene: cd09725:cas2 Type: universal Location: 11916-12206 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7092-10094 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVIR01000195.1 Clostridioides difficile 6057 gcd6057.contig.194, whole genome shotgun sequence

⇒Summary: seq-len = 39502 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35476-36226 bp Zoom in on locus 1 x12 CRISPR array Location: 35476-36226 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 35476-36226 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 35476-36226 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVIR01000140.1 Clostridioides difficile 6057 gcd6057.contig.139, whole genome shotgun sequence

⇒Summary: seq-len = 13741 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3022-3249 bp Zoom in on locus 1 x4 CRISPR array Location: 3022-3249 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3022-3249 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3022-3249 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVIR01000208.1 Clostridioides difficile 6057 gcd6057.contig.207, whole genome shotgun sequence

⇒Summary: seq-len = 26663 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 621-1178 bp Zoom in on locus 1 x9 CRISPR array Location: 621-1178 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 621-1178 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 621-1178 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVIR01000132.1 Clostridioides difficile 6057 gcd6057.contig.131, whole genome shotgun sequence

⇒Summary: seq-len = 74038 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67520-67941 bp Zoom in on locus 1 x7 CRISPR array Location: 67520-67941 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 67520-67941 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 67520-67941 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)