CRISPRone

CRISPRone report for GCA_000449965.2_ASM44996v2

♦ Seq 1: AVIV01000083.1 Clostridioides difficile DA00114 gcdDA00114.contig.83, whole genome shotgun sequence

⇒Summary: seq-len = 18533 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 5461-5621 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVIV01000059.1 Clostridioides difficile DA00114 gcdDA00114.contig.59, whole genome shotgun sequence

⇒Summary: seq-len = 5087 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 3804-4954 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVIV01000115.1 Clostridioides difficile DA00114 gcdDA00114.contig.115, whole genome shotgun sequence

⇒Summary: seq-len = 35228 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVIV01000118.1 Clostridioides difficile DA00114 gcdDA00114.contig.118, whole genome shotgun sequence

⇒Summary: seq-len = 48538 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 4007-4364 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVIV01000056.1 Clostridioides difficile DA00114 gcdDA00114.contig.56, whole genome shotgun sequence

⇒Summary: seq-len = 79088 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 572-996 bp]: array | spacers
           [Locus range 2600-2824 bp]: array | spacers
           [Locus range 4617-5503 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVIV01000044.1 Clostridioides difficile DA00114 gcdDA00114.contig.43, whole genome shotgun sequence

⇒Summary: seq-len = 130770 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 124221-124714 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVIV01000104.1 Clostridioides difficile DA00114 gcdDA00114.contig.104, whole genome shotgun sequence

⇒Summary: seq-len = 37426 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 33693-34309 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVIV01000052.1 Clostridioides difficile DA00114 gcdDA00114.contig.52, whole genome shotgun sequence

⇒Summary: seq-len = 12370 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 3134-3625 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVIV01000040.1 Clostridioides difficile DA00114 gcdDA00114.contig.39, whole genome shotgun sequence

⇒Summary: seq-len = 108331 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 100891-102040 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVIV01000134.1 Clostridioides difficile DA00114 gcdDA00114.contig.134, whole genome shotgun sequence

⇒Summary: seq-len = 18066 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 8720-8813 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVIV01000130.1 Clostridioides difficile DA00114 gcdDA00114.contig.130, whole genome shotgun sequence

⇒Summary: seq-len = 50377 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 29581-31180 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: AVIV01000129.1 Clostridioides difficile DA00114 gcdDA00114.contig.129, whole genome shotgun sequence

⇒Summary: seq-len = 22446 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 632-859 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)