CRISPRone

CRISPRone report for GCA_000450005.2_ASM45000v2

♦ Seq 1: AVIX01000044.1 Clostridioides difficile DA00128 gcdDA00128.contig.43, whole genome shotgun sequence

⇒Summary: seq-len = 59703 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5366-6777 bp Zoom in on locus 1 x22 CRISPR array Location: 5366-6777 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 5366-6777 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5366-6777 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVIX01000065.1 Clostridioides difficile DA00128 gcdDA00128.contig.64, whole genome shotgun sequence

⇒Summary: seq-len = 4067 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 288-709 bp Zoom in on locus 1 x7 CRISPR array Location: 288-709 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 288-709 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 288-709 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVIX01000040.1 Clostridioides difficile DA00128 gcdDA00128.contig.39, whole genome shotgun sequence

⇒Summary: seq-len = 14199 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3150-3642 bp Zoom in on locus 1 x8 CRISPR array Location: 3150-3642 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3150-3642 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3150-3642 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVIX01000034.1 Clostridioides difficile DA00128 gcdDA00128.contig.33, whole genome shotgun sequence

⇒Summary: seq-len = 258711 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185253-185414 bp 2 Locus 2: 209323-214992 bp Zoom in on locus 1 x3 Zoom in on locus 2 x5 x5 x2 CRISPR array Location: 185253-185414 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 185253-185414 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 209323-209616 bp Num of repeats: 5 Spacers: s3-s6 CRISPR array Location: 209323-209616 bp Num of repeats: 5 Spacers: s3-s6 CRISPR array Location: 212259-212552 bp Num of repeats: 5 Spacers: s7-s10 CRISPR array Location: 212259-212552 bp Num of repeats: 5 Spacers: s7-s10 CRISPR array Location: 214899-214992 bp Num of repeats: 2 Spacers: s11-s11 CRISPR array Location: 214899-214992 bp Num of repeats: 2 Spacers: s11-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185253-185414 bp]: array | spacers
           [Locus range 209323-209616 bp]: array | spacers
           [Locus range 212259-212552 bp]: array | spacers
           [Locus range 214899-214992 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVIX01000054.1 Clostridioides difficile DA00128 gcdDA00128.contig.53, whole genome shotgun sequence

⇒Summary: seq-len = 25147 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5032-5125 bp Zoom in on locus 1 x2 CRISPR array Location: 5032-5125 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 5032-5125 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5032-5125 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVIX01000073.1 Clostridioides difficile DA00128 gcdDA00128.contig.72, whole genome shotgun sequence

⇒Summary: seq-len = 198684 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 133463-143575 bp Zoom in on locus 1 x9 CRISPR array Location: 133463-134011 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 133463-134011 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 134195-134461 bp Gene: cd09722:cas1 Type: universal Location: 134464-135444 bp Gene: pfam01930:cas4 Type: Type-I Location: 135528-135965 bp Gene: COG1203:cas3 Type: Type-I Location: 136013-137635 bp Gene: cd09641:cas3HD Type: Type-I Location: 137653-138333 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 138344-139045 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 139047-139961 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 139963-141840 bp Gene: pfam01881:cas6 Type: other Location: 141846-142640 bp Gene: pfam13280:WYL Type: other Location: 142661-143575 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 133463-134011 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVIX01000066.1 Clostridioides difficile DA00128 gcdDA00128.contig.65, whole genome shotgun sequence

⇒Summary: seq-len = 238875 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 161927-169792 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 161927-164335 bp Gene: cd09693:cas5 Type: Type-I Location: 164362-165159 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 165175-166188 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 166208-167683 bp Gene: pfam01881:cas6 Type: other Location: 167688-168425 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 168683-169792 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVIX01000036.1 Clostridioides difficile DA00128 gcdDA00128.contig.35, whole genome shotgun sequence

⇒Summary: seq-len = 174119 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113774-114593 bp Zoom in on locus 1 x13 CRISPR array Location: 113774-114593 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 113774-114593 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 113774-114593 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVIX01000067.1 Clostridioides difficile DA00128 gcdDA00128.contig.66, whole genome shotgun sequence

⇒Summary: seq-len = 58848 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4175-4670 bp Zoom in on locus 1 x8 CRISPR array Location: 4175-4670 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 4175-4670 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4175-4670 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)