CRISPRone

CRISPRone report for GCA_000450025.2_ASM45002v2

♦ Seq 1: AVIY01000053.1 Clostridioides difficile DA00129 gcdDA00129.contig.53, whole genome shotgun sequence

⇒Summary: seq-len = 107146 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 96706-97131 bp Zoom in on locus 1 x7 CRISPR array Location: 96706-97131 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 96706-97131 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 96706-97131 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVIY01000045.1 Clostridioides difficile DA00129 gcdDA00129.contig.45, whole genome shotgun sequence

⇒Summary: seq-len = 28318 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10613-10841 bp Zoom in on locus 1 x4 CRISPR array Location: 10613-10841 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 10613-10841 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10613-10841 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVIY01000034.1 Clostridioides difficile DA00129 gcdDA00129.contig.34, whole genome shotgun sequence

⇒Summary: seq-len = 75744 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 50784-51407 bp Zoom in on locus 1 x10 CRISPR array Location: 50784-51407 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 50784-51407 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 50784-51407 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVIY01000067.1 Clostridioides difficile DA00129 gcdDA00129.contig.67, whole genome shotgun sequence

⇒Summary: seq-len = 78964 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 58150-69301 bp Zoom in on locus 1 x25 CRISPR array Location: 58150-59763 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 58150-59763 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 59947-60213 bp Gene: cd09722:cas1 Type: universal Location: 60216-61196 bp Gene: pfam01930:cas4 Type: Type-I Location: 61199-61717 bp Gene: cd09641:cas3HD Type: Type-I Location: 61765-64086 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 64097-64798 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 64800-65714 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 65716-67566 bp Gene: pfam01881:cas6 Type: other Location: 67572-68366 bp Gene: pfam13280:WYL Type: other Location: 68387-69301 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 58150-59763 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVIY01000048.1 Clostridioides difficile DA00129 gcdDA00129.contig.48, whole genome shotgun sequence

⇒Summary: seq-len = 48444 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1873-3478 bp Zoom in on locus 1 x25 CRISPR array Location: 1873-3478 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 1873-3478 bp Num of repeats: 25 Spacers: s1-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1873-3478 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVIY01000023.1 Clostridioides difficile DA00129 gcdDA00129.contig.23, whole genome shotgun sequence

⇒Summary: seq-len = 9832 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 587-814 bp Zoom in on locus 1 x4 CRISPR array Location: 587-814 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 587-814 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 587-814 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVIY01000058.1 Clostridioides difficile DA00129 gcdDA00129.contig.58, whole genome shotgun sequence

⇒Summary: seq-len = 361071 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33817-41682 bp 2 Locus 2: 114962-115056 bp Zoom in on locus 1 Zoom in on locus 2 x2 Gene: cd09641:cas3HD Type: Type-I Location: 33817-36225 bp Gene: cd09693:cas5 Type: Type-I Location: 36252-37049 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 37065-38078 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 38098-39573 bp Gene: pfam01881:cas6 Type: other Location: 39578-40315 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 40573-41682 bp CRISPR array Location: 114962-115056 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 114962-115056 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 114962-115056 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVIY01000032.1 Clostridioides difficile DA00129 gcdDA00129.contig.32, whole genome shotgun sequence

⇒Summary: seq-len = 125085 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 118601-119025 bp Zoom in on locus 1 x7 CRISPR array Location: 118601-119025 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 118601-119025 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 118601-119025 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVIY01000029.1 Clostridioides difficile DA00129 gcdDA00129.contig.29, whole genome shotgun sequence

⇒Summary: seq-len = 72004 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46120-46283 bp Zoom in on locus 1 x3 CRISPR array Location: 46120-46283 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 46120-46283 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 46120-46283 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVIY01000038.1 Clostridioides difficile DA00129 gcdDA00129.contig.38, whole genome shotgun sequence

⇒Summary: seq-len = 74412 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20013-21425 bp Zoom in on locus 1 x22 CRISPR array Location: 20013-21425 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 20013-21425 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20013-21425 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)