CRISPRone

CRISPRone report for GCA_000450065.2_ASM45006v2

♦ Seq 1: AVJA01000051.1 Clostridioides difficile DA00132 gcdDA00132.contig.50, whole genome shotgun sequence

⇒Summary: seq-len = 24990 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7280-7441 bp Zoom in on locus 1 x3 CRISPR array Location: 7280-7441 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 7280-7441 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7280-7441 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVJA01000036.1 Clostridioides difficile DA00132 gcdDA00132.contig.35, whole genome shotgun sequence

⇒Summary: seq-len = 242579 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 178325-178746 bp Zoom in on locus 1 x7 CRISPR array Location: 178325-178746 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 178325-178746 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 178325-178746 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVJA01000035.1 Clostridioides difficile DA00132 gcdDA00132.contig.34, whole genome shotgun sequence

⇒Summary: seq-len = 161022 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 130950-131243 bp Zoom in on locus 1 x5 CRISPR array Location: 130950-131243 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 130950-131243 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 130950-131243 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVJA01000046.1 Clostridioides difficile DA00132 gcdDA00132.contig.45, whole genome shotgun sequence

⇒Summary: seq-len = 36942 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5374-5735 bp Zoom in on locus 1 x6 CRISPR array Location: 5374-5735 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 5374-5735 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5374-5735 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVJA01000055.1 Clostridioides difficile DA00132 gcdDA00132.contig.54, whole genome shotgun sequence

⇒Summary: seq-len = 97241 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62249-74305 bp Zoom in on locus 1 x46 Gene: cd09725:cas2 Type: universal Location: 62249-62539 bp Gene: cd09722:cas1 Type: universal Location: 62750-63757 bp Gene: pfam01930:cas4 Type: Type-I Location: 63783-64277 bp CRISPR array Location: 64362-67363 bp Num of repeats: 46 Spacers: s1-s45 CRISPR array Location: 64362-67363 bp Num of repeats: 46 Spacers: s1-s45 Gene: cd09641:cas3HD Type: Type-I Location: 67553-70111 bp Gene: cd09693:cas5 Type: Type-I Location: 70135-70875 bp Gene: pfam05107:cas7b Type: Type-I Location: 70877-71866 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 71859-73598 bp Gene: cd09652:cas6 Type: other Location: 73610-74305 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 64362-67363 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVJA01000057.1 Clostridioides difficile DA00132 gcdDA00132.contig.56, whole genome shotgun sequence

⇒Summary: seq-len = 101742 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97632-98382 bp Zoom in on locus 1 x12 CRISPR array Location: 97632-98382 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 97632-98382 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 97632-98382 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVJA01000039.1 Clostridioides difficile DA00132 gcdDA00132.contig.38, whole genome shotgun sequence

⇒Summary: seq-len = 13930 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3147-3374 bp Zoom in on locus 1 x4 CRISPR array Location: 3147-3374 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3147-3374 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3147-3374 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVJA01000060.1 Clostridioides difficile DA00132 gcdDA00132.contig.59, whole genome shotgun sequence

⇒Summary: seq-len = 55317 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 577-1134 bp Zoom in on locus 1 x9 CRISPR array Location: 577-1134 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 577-1134 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 577-1134 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVJA01000058.1 Clostridioides difficile DA00132 gcdDA00132.contig.57, whole genome shotgun sequence

⇒Summary: seq-len = 235266 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 158372-166237 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 158372-160780 bp Gene: cd09693:cas5 Type: Type-I Location: 160807-161604 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 161620-162633 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 162653-164128 bp Gene: pfam01881:cas6 Type: other Location: 164133-164870 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 165128-166237 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)