CRISPRone

CRISPRone report for GCA_000450105.2_ASM45010v2

♦ Seq 1: AVJC01000038.1 Clostridioides difficile DA00141 gcdDA00141.contig.37, whole genome shotgun sequence

⇒Summary: seq-len = 160355 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 87575-88527 bp Zoom in on locus 1 x15 CRISPR array Location: 87575-88527 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 87575-88527 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 87575-88527 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVJC01000024.1 Clostridioides difficile DA00141 gcdDA00141.contig.23, whole genome shotgun sequence

⇒Summary: seq-len = 30937 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6106-6598 bp Zoom in on locus 1 x8 CRISPR array Location: 6106-6598 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 6106-6598 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6106-6598 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVJC01000027.1 Clostridioides difficile DA00141 gcdDA00141.contig.26, whole genome shotgun sequence

⇒Summary: seq-len = 161626 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42319-45234 bp Zoom in on locus 1 x15 x5 CRISPR array Location: 42319-43290 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 42319-43290 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 44942-45234 bp Num of repeats: 5 Spacers: s15-s18 CRISPR array Location: 44942-45234 bp Num of repeats: 5 Spacers: s15-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 42319-43290 bp]: array | spacers
           [Locus range 44942-45234 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVJC01000041.1 Clostridioides difficile DA00141 gcdDA00141.contig.40, whole genome shotgun sequence

⇒Summary: seq-len = 96578 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19573-27438 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 19573-21981 bp Gene: cd09693:cas5 Type: Type-I Location: 22008-22805 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 22821-23834 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 23854-25329 bp Gene: pfam01881:cas6 Type: other Location: 25334-26071 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 26329-27438 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVJC01000042.1 Clostridioides difficile DA00141 gcdDA00141.contig.41, whole genome shotgun sequence

⇒Summary: seq-len = 241612 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3946-4301 bp Zoom in on locus 1 x6 CRISPR array Location: 3946-4301 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 3946-4301 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3946-4301 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVJC01000021.1 Clostridioides difficile DA00141 gcdDA00141.contig.20, whole genome shotgun sequence

⇒Summary: seq-len = 373748 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 352511-352938 bp Zoom in on locus 1 x7 CRISPR array Location: 352511-352938 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 352511-352938 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 352511-352938 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVJC01000029.1 Clostridioides difficile DA00141 gcdDA00141.contig.28, whole genome shotgun sequence

⇒Summary: seq-len = 73561 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18941-20679 bp Zoom in on locus 1 x27 CRISPR array Location: 18941-20679 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 18941-20679 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18941-20679 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVJC01000033.1 Clostridioides difficile DA00141 gcdDA00141.contig.32, whole genome shotgun sequence

⇒Summary: seq-len = 80926 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22554-23827 bp Zoom in on locus 1 x20 CRISPR array Location: 22554-23827 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 22554-23827 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22554-23827 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)