CRISPRone

CRISPRone report for GCA_000450125.1_ASM45012v1

♦ Seq 1: AVJD01000135.1 Clostridioides difficile DA00142 gcdDA00142.contig.152, whole genome shotgun sequence

⇒Summary: seq-len = 63928 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28289-36626 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 28289-30697 bp Gene: cd09693:cas5 Type: Type-I Location: 30724-31530 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31546-32559 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32578-34044 bp Gene: pfam01881:cas6 Type: other Location: 34049-34786 bp Gene: unk Type: unknown Location: 34887-35063 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 35517-36626 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVJD01000061.1 Clostridioides difficile DA00142 gcdDA00142.contig.77, whole genome shotgun sequence

⇒Summary: seq-len = 16223 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 586-2040 bp Zoom in on locus 1 x7 x7 CRISPR array Location: 586-1013 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 586-1013 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1616-2040 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 1616-2040 bp Num of repeats: 7 Spacers: s7-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 586-1013 bp]: array | spacers
           [Locus range 1616-2040 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVJD01000113.1 Clostridioides difficile DA00142 gcdDA00142.contig.130, whole genome shotgun sequence

⇒Summary: seq-len = 25484 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2414-2575 bp Zoom in on locus 1 x3 CRISPR array Location: 2414-2575 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2414-2575 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2414-2575 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVJD01000086.1 Clostridioides difficile DA00142 gcdDA00142.contig.102, whole genome shotgun sequence

⇒Summary: seq-len = 26746 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1879-2373 bp Zoom in on locus 1 x8 CRISPR array Location: 1879-2373 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 1879-2373 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1879-2373 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVJD01000138.1 Clostridioides difficile DA00142 gcdDA00142.contig.155, whole genome shotgun sequence

⇒Summary: seq-len = 48335 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1535-2491 bp Zoom in on locus 1 x15 CRISPR array Location: 1535-2491 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1535-2491 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1535-2491 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVJD01000077.1 Clostridioides difficile DA00142 gcdDA00142.contig.93, whole genome shotgun sequence

⇒Summary: seq-len = 44831 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 37517-38731 bp Zoom in on locus 1 x19 CRISPR array Location: 37517-38731 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 37517-38731 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 37517-38731 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVJD01000132.1 Clostridioides difficile DA00142 gcdDA00142.contig.149, whole genome shotgun sequence

⇒Summary: seq-len = 62293 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35509-36264 bp Zoom in on locus 1 x12 CRISPR array Location: 35509-36264 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 35509-36264 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 35509-36264 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVJD01000097.1 Clostridioides difficile DA00142 gcdDA00142.contig.113, whole genome shotgun sequence

⇒Summary: seq-len = 40881 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2412-3300 bp Zoom in on locus 1 x14 CRISPR array Location: 2412-3300 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 2412-3300 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2412-3300 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVJD01000153.1 Clostridioides difficile DA00142 gcdDA00142.contig.171, whole genome shotgun sequence

⇒Summary: seq-len = 37127 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16269-27546 bp Zoom in on locus 1 x27 CRISPR array Location: 16269-18008 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 16269-18008 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09725:cas2 Type: universal Location: 18192-18458 bp Gene: cd09722:cas1 Type: universal Location: 18461-19441 bp Gene: pfam01930:cas4 Type: Type-I Location: 19444-19962 bp Gene: COG1203:cas3 Type: Type-I Location: 20010-22331 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 22342-23043 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 23045-23959 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 23961-25811 bp Gene: pfam01881:cas6 Type: other Location: 25817-26611 bp Gene: pfam13280:WYL Type: other Location: 26632-27546 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 16269-18008 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)