CRISPRone

CRISPRone report for GCA_000450165.2_ASM45016v2

♦ Seq 1: AVJF01000042.1 Clostridioides difficile DA00149 gcdDA00149.contig.42, whole genome shotgun sequence

⇒Summary: seq-len = 188682 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124422-124981 bp Zoom in on locus 1 x9 CRISPR array Location: 124422-124981 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 124422-124981 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124422-124981 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVJF01000078.1 Clostridioides difficile DA00149 gcdDA00149.contig.78, whole genome shotgun sequence

⇒Summary: seq-len = 56202 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12179-12272 bp Zoom in on locus 1 x2 CRISPR array Location: 12179-12272 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 12179-12272 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12179-12272 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVJF01000066.1 Clostridioides difficile DA00149 gcdDA00149.contig.66, whole genome shotgun sequence

⇒Summary: seq-len = 82191 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78145-78761 bp Zoom in on locus 1 x10 CRISPR array Location: 78145-78761 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 78145-78761 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78145-78761 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVJF01000043.1 Clostridioides difficile DA00149 gcdDA00149.contig.43, whole genome shotgun sequence

⇒Summary: seq-len = 27471 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17961-18718 bp Zoom in on locus 1 x12 CRISPR array Location: 17961-18718 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 17961-18718 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17961-18718 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVJF01000069.1 Clostridioides difficile DA00149 gcdDA00149.contig.69, whole genome shotgun sequence

⇒Summary: seq-len = 63156 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56179-62680 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 56179-58587 bp Gene: cd09693:cas5 Type: Type-I Location: 58614-59411 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 59427-60443 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 60463-61938 bp Gene: pfam01881:cas6 Type: other Location: 61943-62680 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVJF01000058.1 Clostridioides difficile DA00149 gcdDA00149.contig.58, whole genome shotgun sequence

⇒Summary: seq-len = 42407 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2021-2181 bp Zoom in on locus 1 x3 CRISPR array Location: 2021-2181 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2021-2181 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2021-2181 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVJF01000071.1 Clostridioides difficile DA00149 gcdDA00149.contig.71, whole genome shotgun sequence

⇒Summary: seq-len = 48647 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4056-4413 bp Zoom in on locus 1 x6 CRISPR array Location: 4056-4413 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 4056-4413 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4056-4413 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVJF01000047.1 Clostridioides difficile DA00149 gcdDA00149.contig.47, whole genome shotgun sequence

⇒Summary: seq-len = 36081 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3733-4883 bp Zoom in on locus 1 x18 CRISPR array Location: 3733-4883 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 3733-4883 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3733-4883 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVJF01000075.1 Clostridioides difficile DA00149 gcdDA00149.contig.75, whole genome shotgun sequence

⇒Summary: seq-len = 273551 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252886-263957 bp Zoom in on locus 1 x24 CRISPR array Location: 252886-254419 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 252886-254419 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09725:cas2 Type: universal Location: 254603-254869 bp Gene: cd09722:cas1 Type: universal Location: 254872-255852 bp Gene: pfam01930:cas4 Type: Type-I Location: 255855-256373 bp Gene: COG1203:cas3 Type: Type-I Location: 256421-258742 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258753-259454 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259456-260370 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260372-262222 bp Gene: pfam01881:cas6 Type: other Location: 262228-263022 bp Gene: pfam13280:WYL Type: other Location: 263043-263957 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252886-254419 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)