CRISPRone

CRISPRone report for GCA_000450205.2_ASM45020v2

♦ Seq 1: AVJH01000042.1 Clostridioides difficile DA00160 gcdDA00160.contig.48, whole genome shotgun sequence

⇒Summary: seq-len = 121181 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61279-61702 bp Zoom in on locus 1 x7 CRISPR array Location: 61279-61702 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 61279-61702 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61279-61702 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVJH01000057.1 Clostridioides difficile DA00160 gcdDA00160.contig.63, whole genome shotgun sequence

⇒Summary: seq-len = 132045 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 106462-106622 bp Zoom in on locus 1 x3 CRISPR array Location: 106462-106622 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 106462-106622 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 106462-106622 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVJH01000078.1 Clostridioides difficile DA00160 gcdDA00160.contig.84, whole genome shotgun sequence

⇒Summary: seq-len = 321402 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 102579-105422 bp Zoom in on locus 1 x9 x4 x6 CRISPR array Location: 102579-103134 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 102579-103134 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 103237-103463 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 103237-103463 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 105079-105422 bp Num of repeats: 6 Spacers: s12-s16 CRISPR array Location: 105079-105422 bp Num of repeats: 6 Spacers: s12-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 102579-103134 bp]: array | spacers
           [Locus range 103237-103463 bp]: array | spacers
           [Locus range 105079-105422 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVJH01000071.1 Clostridioides difficile DA00160 gcdDA00160.contig.77, whole genome shotgun sequence

⇒Summary: seq-len = 30419 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9961-20804 bp Zoom in on locus 1 x20 CRISPR array Location: 9961-11239 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 9961-11239 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09725:cas2 Type: universal Location: 11423-11689 bp Gene: cd09722:cas1 Type: universal Location: 11692-12672 bp Gene: pfam01930:cas4 Type: Type-I Location: 12675-13193 bp Gene: COG1203:cas3 Type: Type-I Location: 13241-15562 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 15573-16274 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 16276-17190 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 17192-19069 bp Gene: pfam01881:cas6 Type: other Location: 19075-19869 bp Gene: pfam13280:WYL Type: other Location: 19890-20804 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 9961-11239 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVJH01000075.1 Clostridioides difficile DA00160 gcdDA00160.contig.81, whole genome shotgun sequence

⇒Summary: seq-len = 28602 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8699-8792 bp Zoom in on locus 1 x2 CRISPR array Location: 8699-8792 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 8699-8792 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8699-8792 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVJH01000063.1 Clostridioides difficile DA00160 gcdDA00160.contig.69, whole genome shotgun sequence

⇒Summary: seq-len = 124538 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97763-98516 bp Zoom in on locus 1 x12 CRISPR array Location: 97763-98516 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 97763-98516 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 97763-98516 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVJH01000066.1 Clostridioides difficile DA00160 gcdDA00160.contig.72, whole genome shotgun sequence

⇒Summary: seq-len = 120067 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4193-4750 bp Zoom in on locus 1 x9 CRISPR array Location: 4193-4750 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 4193-4750 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4193-4750 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVJH01000064.1 Clostridioides difficile DA00160 gcdDA00160.contig.70, whole genome shotgun sequence

⇒Summary: seq-len = 213340 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135888-144234 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 135888-138296 bp Gene: cd09693:cas5 Type: Type-I Location: 138323-139120 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 139136-140152 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 140172-141647 bp Gene: pfam01881:cas6 Type: other Location: 141652-142389 bp Gene: unk Type: unknown Location: 142490-142666 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 143125-144234 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVJH01000045.1 Clostridioides difficile DA00160 gcdDA00160.contig.51, whole genome shotgun sequence

⇒Summary: seq-len = 43385 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18574-18999 bp Zoom in on locus 1 x7 CRISPR array Location: 18574-18999 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 18574-18999 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18574-18999 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVJH01000039.1 Clostridioides difficile DA00160 gcdDA00160.contig.45, whole genome shotgun sequence

⇒Summary: seq-len = 217705 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 186841-187920 bp Zoom in on locus 1 x17 CRISPR array Location: 186841-187920 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 186841-187920 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 186841-187920 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVJH01000050.1 Clostridioides difficile DA00160 gcdDA00160.contig.56, whole genome shotgun sequence

⇒Summary: seq-len = 58015 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3970-5053 bp Zoom in on locus 1 x17 CRISPR array Location: 3970-5053 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 3970-5053 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3970-5053 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)