CRISPRone

CRISPRone report for GCA_000450225.2_ASM45022v2

♦ Seq 1: AVJI01000010.1 Clostridioides difficile DA00165 gcdDA00165.contig.9, whole genome shotgun sequence

⇒Summary: seq-len = 602826 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 280284-291561 bp Zoom in on locus 1 x27 CRISPR array Location: 280284-282023 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 280284-282023 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09725:cas2 Type: universal Location: 282207-282473 bp Gene: cd09722:cas1 Type: universal Location: 282476-283456 bp Gene: pfam01930:cas4 Type: Type-I Location: 283459-283977 bp Gene: COG1203:cas3 Type: Type-I Location: 284025-286346 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 286357-287058 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 287060-287974 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 287976-289826 bp Gene: pfam01881:cas6 Type: other Location: 289832-290626 bp Gene: pfam13280:WYL Type: other Location: 290647-291561 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 280284-282023 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVJI01000009.1 Clostridioides difficile DA00165 gcdDA00165.contig.8, whole genome shotgun sequence

⇒Summary: seq-len = 1422160 bp; # of CRISPR array = 7; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54739-55233 bp 2 Locus 2: 145886-147340 bp 3 Locus 3: 281434-282148 bp 4 Locus 4: 594560-594721 bp 5 Locus 5: 939079-939771 bp 6 Locus 6: 1102661-1110369 bp 7 Locus 7: 1183375-1184331 bp Zoom in on locus 1 x8 Zoom in on locus 2 x7 x7 Zoom in on locus 3 x12 Zoom in on locus 4 x3 Zoom in on locus 5 x11 Zoom in on locus 6 Zoom in on locus 7 x15 CRISPR array Location: 54739-55233 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 54739-55233 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 145886-146313 bp Num of repeats: 7 Spacers: s8-s13 CRISPR array Location: 145886-146313 bp Num of repeats: 7 Spacers: s8-s13 CRISPR array Location: 146916-147340 bp Num of repeats: 7 Spacers: s14-s19 CRISPR array Location: 146916-147340 bp Num of repeats: 7 Spacers: s14-s19 CRISPR array Location: 281434-282148 bp Num of repeats: 12 Spacers: s20-s30 CRISPR array Location: 281434-282148 bp Num of repeats: 12 Spacers: s20-s30 CRISPR array Location: 594560-594721 bp Num of repeats: 3 Spacers: s31-s32 CRISPR array Location: 594560-594721 bp Num of repeats: 3 Spacers: s31-s32 CRISPR array Location: 939079-939771 bp Num of repeats: 11 Spacers: s33-s42 CRISPR array Location: 939079-939771 bp Num of repeats: 11 Spacers: s33-s42 Gene: COG1203:cas3 Type: Type-I Location: 1102661-1104199 bp Gene: cd09641:cas3HD Type: Type-I Location: 1104223-1105062 bp Gene: cd09693:cas5 Type: Type-I Location: 1105089-1105895 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1105911-1106753 bp Gene: unk Type: unknown Location: 1106780-1106923 bp Gene: unk Type: unknown Location: 1106942-1107607 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1107651-1108406 bp Gene: pfam01881:cas6 Type: other Location: 1108411-1108878 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1109875-1110369 bp CRISPR array Location: 1183375-1184331 bp Num of repeats: 15 Spacers: s43-s56 CRISPR array Location: 1183375-1184331 bp Num of repeats: 15 Spacers: s43-s56 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 54739-55233 bp]: array | spacers
           [Locus range 145886-146313 bp]: array | spacers
           [Locus range 146916-147340 bp]: array | spacers
           [Locus range 281434-282148 bp]: array | spacers
           [Locus range 594560-594721 bp]: array | spacers
           [Locus range 939079-939771 bp]: array | spacers
           [Locus range 1183375-1184331 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVJI01000008.1 Clostridioides difficile DA00165 gcdDA00165.contig.7, whole genome shotgun sequence

⇒Summary: seq-len = 939256 bp; # of CRISPR array = 1; # of cas gene = 4  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 393699-394913 bp 2 Locus 2: 446830-457679 bp Zoom in on locus 1 x19 Zoom in on locus 2 CRISPR array Location: 393699-394913 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 393699-394913 bp Num of repeats: 19 Spacers: s1-s18 Gene: cls001593:casR Type: Type-I Location: 446830-448104 bp Gene: unk Type: unknown Location: 448265-450283 bp Gene: pfam00078:RT Type: other Location: 450379-452220 bp Gene: unk Type: unknown Location: 452664-452909 bp Gene: unk Type: unknown Location: 453604-453801 bp Gene: COG2378:WYL Type: other Location: 453806-455791 bp Gene: cd09639:cas3 Type: Type-I Location: 456066-457679 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 393699-394913 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)