CRISPRone

CRISPRone report for GCA_000450245.2_ASM45024v2

♦ Seq 1: AVJJ01000108.1 Clostridioides difficile DA00167 gcdDA00167.contig.108, whole genome shotgun sequence

⇒Summary: seq-len = 110784 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33851-41716 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 33851-36259 bp Gene: cd09693:cas5 Type: Type-I Location: 36286-37083 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 37099-38112 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 38132-39607 bp Gene: pfam01881:cas6 Type: other Location: 39612-40349 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 40607-41716 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVJJ01000068.1 Clostridioides difficile DA00167 gcdDA00167.contig.68, whole genome shotgun sequence

⇒Summary: seq-len = 3985 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2402-3813 bp Zoom in on locus 1 x22 CRISPR array Location: 2402-3813 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 2402-3813 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2402-3813 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVJJ01000055.1 Clostridioides difficile DA00167 gcdDA00167.contig.55, whole genome shotgun sequence

⇒Summary: seq-len = 51691 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44821-45640 bp Zoom in on locus 1 x13 CRISPR array Location: 44821-45640 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 44821-45640 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44821-45640 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVJJ01000117.1 Clostridioides difficile DA00167 gcdDA00167.contig.117, whole genome shotgun sequence

⇒Summary: seq-len = 72556 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7349-17462 bp Zoom in on locus 1 x9 CRISPR array Location: 7349-7897 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 7349-7897 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 8081-8347 bp Gene: cd09722:cas1 Type: universal Location: 8350-9330 bp Gene: pfam01930:cas4 Type: Type-I Location: 9414-9851 bp Gene: COG1203:cas3 Type: Type-I Location: 9899-12220 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 12231-12932 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 12934-13848 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 13850-15727 bp Gene: pfam01881:cas6 Type: other Location: 15733-16527 bp Gene: pfam13280:WYL Type: other Location: 16548-17462 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7349-7897 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVJJ01000062.1 Clostridioides difficile DA00167 gcdDA00167.contig.62, whole genome shotgun sequence

⇒Summary: seq-len = 12401 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3197-3689 bp Zoom in on locus 1 x8 CRISPR array Location: 3197-3689 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3197-3689 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3197-3689 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVJJ01000051.1 Clostridioides difficile DA00167 gcdDA00167.contig.51, whole genome shotgun sequence

⇒Summary: seq-len = 258702 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185254-185415 bp 2 Locus 2: 209323-214992 bp Zoom in on locus 1 x3 Zoom in on locus 2 x5 x5 x2 CRISPR array Location: 185254-185415 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 185254-185415 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 209323-209616 bp Num of repeats: 5 Spacers: s3-s6 CRISPR array Location: 209323-209616 bp Num of repeats: 5 Spacers: s3-s6 CRISPR array Location: 212259-212552 bp Num of repeats: 5 Spacers: s7-s10 CRISPR array Location: 212259-212552 bp Num of repeats: 5 Spacers: s7-s10 CRISPR array Location: 214899-214992 bp Num of repeats: 2 Spacers: s11-s11 CRISPR array Location: 214899-214992 bp Num of repeats: 2 Spacers: s11-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185254-185415 bp]: array | spacers
           [Locus range 209323-209616 bp]: array | spacers
           [Locus range 212259-212552 bp]: array | spacers
           [Locus range 214899-214992 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVJJ01000109.1 Clostridioides difficile DA00167 gcdDA00167.contig.109, whole genome shotgun sequence

⇒Summary: seq-len = 71797 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4082-4577 bp Zoom in on locus 1 x8 CRISPR array Location: 4082-4577 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 4082-4577 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4082-4577 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVJJ01000103.1 Clostridioides difficile DA00167 gcdDA00167.contig.103, whole genome shotgun sequence

⇒Summary: seq-len = 4757 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1063-1484 bp Zoom in on locus 1 x7 CRISPR array Location: 1063-1484 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1063-1484 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1063-1484 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVJJ01000085.1 Clostridioides difficile DA00167 gcdDA00167.contig.85, whole genome shotgun sequence

⇒Summary: seq-len = 24405 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22288-22381 bp Zoom in on locus 1 x2 CRISPR array Location: 22288-22381 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 22288-22381 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22288-22381 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)