CRISPRone

CRISPRone report for GCA_000450265.2_ASM45026v2

♦ Seq 1: AVJK01000054.1 Clostridioides difficile DA00174 gcdDA00174.contig.53, whole genome shotgun sequence

⇒Summary: seq-len = 9528 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1924-3074 bp Zoom in on locus 1 x18 CRISPR array Location: 1924-3074 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1924-3074 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1924-3074 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVJK01000104.1 Clostridioides difficile DA00174 gcdDA00174.contig.103, whole genome shotgun sequence

⇒Summary: seq-len = 34185 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13800-13893 bp Zoom in on locus 1 x2 CRISPR array Location: 13800-13893 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 13800-13893 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13800-13893 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVJK01000047.1 Clostridioides difficile DA00174 gcdDA00174.contig.46, whole genome shotgun sequence

⇒Summary: seq-len = 12297 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3058-3549 bp Zoom in on locus 1 x8 CRISPR array Location: 3058-3549 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3058-3549 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3058-3549 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVJK01000100.1 Clostridioides difficile DA00174 gcdDA00174.contig.99, whole genome shotgun sequence

⇒Summary: seq-len = 133595 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90452-101589 bp Zoom in on locus 1 x25 CRISPR array Location: 90452-92051 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 90452-92051 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 92235-92501 bp Gene: cd09722:cas1 Type: universal Location: 92504-93484 bp Gene: pfam01930:cas4 Type: Type-I Location: 93487-94005 bp Gene: COG1203:cas3 Type: Type-I Location: 94053-96374 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 96385-97086 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 97088-98002 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 98004-99854 bp Gene: pfam01881:cas6 Type: other Location: 99860-100654 bp Gene: pfam13280:WYL Type: other Location: 100675-101589 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 90452-92051 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVJK01000092.1 Clostridioides difficile DA00174 gcdDA00174.contig.91, whole genome shotgun sequence

⇒Summary: seq-len = 48707 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4071-4428 bp Zoom in on locus 1 x6 CRISPR array Location: 4071-4428 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 4071-4428 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4071-4428 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVJK01000039.1 Clostridioides difficile DA00174 gcdDA00174.contig.38, whole genome shotgun sequence

⇒Summary: seq-len = 275058 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89370-89856 bp 2 Locus 2: 244190-245339 bp Zoom in on locus 1 x8 Zoom in on locus 2 x18 CRISPR array Location: 89370-89856 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 89370-89856 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 244190-245339 bp Num of repeats: 18 Spacers: s8-s24 CRISPR array Location: 244190-245339 bp Num of repeats: 18 Spacers: s8-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 89370-89856 bp]: array | spacers
           [Locus range 244190-245339 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVJK01000051.1 Clostridioides difficile DA00174 gcdDA00174.contig.50, whole genome shotgun sequence

⇒Summary: seq-len = 134151 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13387-18318 bp Zoom in on locus 1 x7 x4 x14 CRISPR array Location: 13387-13811 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 13387-13811 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 15415-15639 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 15415-15639 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 17432-18318 bp Num of repeats: 14 Spacers: s10-s22 CRISPR array Location: 17432-18318 bp Num of repeats: 14 Spacers: s10-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13387-13811 bp]: array | spacers
           [Locus range 15415-15639 bp]: array | spacers
           [Locus range 17432-18318 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVJK01000069.1 Clostridioides difficile DA00174 gcdDA00174.contig.68, whole genome shotgun sequence

⇒Summary: seq-len = 7523 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5238-5398 bp Zoom in on locus 1 x3 CRISPR array Location: 5238-5398 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5238-5398 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5238-5398 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVJK01000041.1 Clostridioides difficile DA00174 gcdDA00174.contig.40, whole genome shotgun sequence

⇒Summary: seq-len = 145611 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124329-124822 bp Zoom in on locus 1 x8 CRISPR array Location: 124329-124822 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 124329-124822 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124329-124822 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVJK01000089.1 Clostridioides difficile DA00174 gcdDA00174.contig.88, whole genome shotgun sequence

⇒Summary: seq-len = 72457 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 65406-71907 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 65406-67814 bp Gene: cd09693:cas5 Type: Type-I Location: 67841-68638 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 68654-69670 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 69690-71165 bp Gene: pfam01881:cas6 Type: other Location: 71170-71907 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVJK01000086.1 Clostridioides difficile DA00174 gcdDA00174.contig.85, whole genome shotgun sequence

⇒Summary: seq-len = 84931 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 81040-81656 bp Zoom in on locus 1 x10 CRISPR array Location: 81040-81656 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 81040-81656 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 81040-81656 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)