CRISPRone

CRISPRone report for GCA_000450305.2_ASM45030v2

♦ Seq 1: AVJN01000035.1 Clostridioides difficile DA00191 gcdDA00191.contig.34, whole genome shotgun sequence

⇒Summary: seq-len = 64649 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-885 bp Zoom in on locus 1 x14 CRISPR array Location: 0-885 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 0-885 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-885 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVJN01000036.1 Clostridioides difficile DA00191 gcdDA00191.contig.35, whole genome shotgun sequence

⇒Summary: seq-len = 27793 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16794-17288 bp Zoom in on locus 1 x8 CRISPR array Location: 16794-17288 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 16794-17288 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16794-17288 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVJN01000056.1 Clostridioides difficile DA00191 gcdDA00191.contig.55, whole genome shotgun sequence

⇒Summary: seq-len = 290552 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 162306-170643 bp 2 Locus 2: 243868-244824 bp Zoom in on locus 1 Zoom in on locus 2 x15 Gene: cd09641:cas3HD Type: Type-I Location: 162306-164714 bp Gene: cd09693:cas5 Type: Type-I Location: 164741-165547 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 165563-166576 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 166595-168061 bp Gene: pfam01881:cas6 Type: other Location: 168066-168803 bp Gene: unk Type: unknown Location: 168904-169080 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 169534-170643 bp CRISPR array Location: 243868-244824 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 243868-244824 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 243868-244824 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVJN01000062.1 Clostridioides difficile DA00191 gcdDA00191.contig.61, whole genome shotgun sequence

⇒Summary: seq-len = 299692 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125356-136633 bp Zoom in on locus 1 x27 CRISPR array Location: 125356-127095 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 125356-127095 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09725:cas2 Type: universal Location: 127279-127545 bp Gene: cd09722:cas1 Type: universal Location: 127548-128528 bp Gene: pfam01930:cas4 Type: Type-I Location: 128531-129049 bp Gene: COG1203:cas3 Type: Type-I Location: 129097-131418 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 131429-132130 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132132-133046 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133048-134898 bp Gene: pfam01881:cas6 Type: other Location: 134904-135698 bp Gene: pfam13280:WYL Type: other Location: 135719-136633 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125356-127095 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVJN01000039.1 Clostridioides difficile DA00191 gcdDA00191.contig.38, whole genome shotgun sequence

⇒Summary: seq-len = 64095 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45438-46892 bp Zoom in on locus 1 x7 x7 CRISPR array Location: 45438-45865 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 45438-45865 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 46468-46892 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 46468-46892 bp Num of repeats: 7 Spacers: s7-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45438-45865 bp]: array | spacers
           [Locus range 46468-46892 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVJN01000048.1 Clostridioides difficile DA00191 gcdDA00191.contig.47, whole genome shotgun sequence

⇒Summary: seq-len = 26620 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1126-1287 bp Zoom in on locus 1 x3 CRISPR array Location: 1126-1287 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1126-1287 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1126-1287 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVJN01000042.1 Clostridioides difficile DA00191 gcdDA00191.contig.41, whole genome shotgun sequence

⇒Summary: seq-len = 57325 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18819-19707 bp Zoom in on locus 1 x14 CRISPR array Location: 18819-19707 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 18819-19707 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18819-19707 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVJN01000055.1 Clostridioides difficile DA00191 gcdDA00191.contig.54, whole genome shotgun sequence

⇒Summary: seq-len = 90336 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86397-87152 bp Zoom in on locus 1 x12 CRISPR array Location: 86397-87152 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 86397-87152 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86397-87152 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVJN01000034.1 Clostridioides difficile DA00191 gcdDA00191.contig.33, whole genome shotgun sequence

⇒Summary: seq-len = 125324 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124631-125317 bp Zoom in on locus 1 x11 CRISPR array Location: 124631-125317 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 124631-125317 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124631-125317 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)