CRISPRone

CRISPRone report for GCA_000450345.2_ASM45034v2

♦ Seq 1: AVJP01000045.1 Clostridioides difficile DA00195 gcdDA00195.contig.44, whole genome shotgun sequence

⇒Summary: seq-len = 243630 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 66266-67720 bp 2 Locus 2: 205141-206029 bp Zoom in on locus 1 x7 x7 Zoom in on locus 2 x14 CRISPR array Location: 66266-66693 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 66266-66693 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 67296-67720 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 67296-67720 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 205141-206029 bp Num of repeats: 14 Spacers: s13-s25 CRISPR array Location: 205141-206029 bp Num of repeats: 14 Spacers: s13-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 66266-66693 bp]: array | spacers
           [Locus range 67296-67720 bp]: array | spacers
           [Locus range 205141-206029 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVJP01000061.1 Clostridioides difficile DA00195 gcdDA00195.contig.61, whole genome shotgun sequence

⇒Summary: seq-len = 47092 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 535-1491 bp Zoom in on locus 1 x15 CRISPR array Location: 535-1491 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 535-1491 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 535-1491 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVJP01000059.1 Clostridioides difficile DA00195 gcdDA00195.contig.59, whole genome shotgun sequence

⇒Summary: seq-len = 230849 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 153487-161824 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 153487-155895 bp Gene: cd09693:cas5 Type: Type-I Location: 155922-156728 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 156744-157757 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 157776-159242 bp Gene: pfam01881:cas6 Type: other Location: 159247-159984 bp Gene: unk Type: unknown Location: 160085-160261 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 160715-161824 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVJP01000058.1 Clostridioides difficile DA00195 gcdDA00195.contig.57, whole genome shotgun sequence

⇒Summary: seq-len = 102848 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98613-99368 bp Zoom in on locus 1 x12 CRISPR array Location: 98613-99368 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 98613-99368 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 98613-99368 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVJP01000068.1 Clostridioides difficile DA00195 gcdDA00195.contig.68, whole genome shotgun sequence

⇒Summary: seq-len = 44889 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23966-35243 bp Zoom in on locus 1 x27 CRISPR array Location: 23966-25705 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 23966-25705 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09725:cas2 Type: universal Location: 25889-26155 bp Gene: cd09722:cas1 Type: universal Location: 26158-27138 bp Gene: pfam01930:cas4 Type: Type-I Location: 27141-27659 bp Gene: COG1203:cas3 Type: Type-I Location: 27707-30028 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 30039-30740 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 30742-31656 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 31658-33508 bp Gene: pfam01881:cas6 Type: other Location: 33514-34308 bp Gene: pfam13280:WYL Type: other Location: 34329-35243 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 23966-25705 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVJP01000051.1 Clostridioides difficile DA00195 gcdDA00195.contig.50, whole genome shotgun sequence

⇒Summary: seq-len = 53307 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 627-788 bp Zoom in on locus 1 x3 CRISPR array Location: 627-788 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 627-788 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 627-788 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVJP01000084.1 Clostridioides difficile DA00195 gcdDA00195.contig.85, whole genome shotgun sequence

⇒Summary: seq-len = 29955 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18945-19439 bp Zoom in on locus 1 x8 CRISPR array Location: 18945-19439 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 18945-19439 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18945-19439 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVJP01000040.1 Clostridioides difficile DA00195 gcdDA00195.contig.39, whole genome shotgun sequence

⇒Summary: seq-len = 138134 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124630-125844 bp Zoom in on locus 1 x19 CRISPR array Location: 124630-125844 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 124630-125844 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124630-125844 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)