CRISPRone

CRISPRone report for GCA_000450365.2_ASM45036v2

♦ Seq 1: AVJQ01000015.1 Clostridioides difficile DA00196 gcdDA00196.contig.14, whole genome shotgun sequence

⇒Summary: seq-len = 34245 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1371-1594 bp Zoom in on locus 1 x4 CRISPR array Location: 1371-1594 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1371-1594 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1371-1594 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVJQ01000013.1 Clostridioides difficile DA00196 gcdDA00196.contig.12, whole genome shotgun sequence

⇒Summary: seq-len = 273007 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 170242-170536 bp 2 Locus 2: 260619-260714 bp Zoom in on locus 1 x5 Zoom in on locus 2 x2 CRISPR array Location: 170242-170536 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 170242-170536 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 260619-260714 bp Num of repeats: 2 Spacers: s5-s5 CRISPR array Location: 260619-260714 bp Num of repeats: 2 Spacers: s5-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 170242-170536 bp]: array | spacers
           [Locus range 260619-260714 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVJQ01000009.1 Clostridioides difficile DA00196 gcdDA00196.contig.8, whole genome shotgun sequence

⇒Summary: seq-len = 20135 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4516-10763 bp Zoom in on locus 1 x9 x11 x4 x3 CRISPR array Location: 4516-5071 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 4516-5071 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 7876-8563 bp Num of repeats: 11 Spacers: s9-s18 CRISPR array Location: 7876-8563 bp Num of repeats: 11 Spacers: s9-s18 CRISPR array Location: 10231-10458 bp Num of repeats: 4 Spacers: s19-s21 CRISPR array Location: 10231-10458 bp Num of repeats: 4 Spacers: s19-s21 CRISPR array Location: 10602-10763 bp Num of repeats: 3 Spacers: s22-s23 CRISPR array Location: 10602-10763 bp Num of repeats: 3 Spacers: s22-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4516-5071 bp]: array | spacers
           [Locus range 7876-8563 bp]: array | spacers
           [Locus range 10231-10458 bp]: array | spacers
           [Locus range 10602-10763 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVJQ01000016.1 Clostridioides difficile DA00196 gcdDA00196.contig.15, whole genome shotgun sequence

⇒Summary: seq-len = 623272 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42749-44888 bp 2 Locus 2: 368665-369023 bp 3 Locus 3: 530827-538683 bp Zoom in on locus 1 x33 Zoom in on locus 2 x6 Zoom in on locus 3 CRISPR array Location: 42749-44888 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 42749-44888 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 368665-369023 bp Num of repeats: 6 Spacers: s33-s37 CRISPR array Location: 368665-369023 bp Num of repeats: 6 Spacers: s33-s37 Gene: cd09641:cas3HD Type: Type-I Location: 530827-533235 bp Gene: cd09693:cas5 Type: Type-I Location: 533262-534059 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 534075-535088 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 535108-536574 bp Gene: pfam01881:cas6 Type: other Location: 536579-537316 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 537574-538683 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 42749-44888 bp]: array | spacers
           [Locus range 368665-369023 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVJQ01000021.1 Clostridioides difficile DA00196 gcdDA00196.contig.20, whole genome shotgun sequence

⇒Summary: seq-len = 746852 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 255005-265671 bp Zoom in on locus 1 x18 CRISPR array Location: 255005-256133 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 255005-256133 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09725:cas2 Type: universal Location: 256317-256583 bp Gene: cd09722:cas1 Type: universal Location: 256586-257566 bp Gene: pfam01930:cas4 Type: Type-I Location: 257569-258087 bp Gene: cd09641:cas3HD Type: Type-I Location: 258135-260456 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 260467-261168 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 261170-262084 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 262086-263936 bp Gene: pfam01881:cas6 Type: other Location: 263942-264736 bp Gene: pfam13280:WYL Type: other Location: 264757-265671 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 255005-256133 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVJQ01000014.1 Clostridioides difficile DA00196 gcdDA00196.contig.13, whole genome shotgun sequence

⇒Summary: seq-len = 442198 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132594-133741 bp Zoom in on locus 1 x18 CRISPR array Location: 132594-133741 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 132594-133741 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 132594-133741 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVJQ01000012.1 Clostridioides difficile DA00196 gcdDA00196.contig.11, whole genome shotgun sequence

⇒Summary: seq-len = 395318 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 386997-387484 bp Zoom in on locus 1 x8 CRISPR array Location: 386997-387484 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 386997-387484 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 386997-387484 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)