CRISPRone

CRISPRone report for GCA_000450385.2_ASM45038v2

♦ Seq 1: AVJR01000012.1 Clostridioides difficile DA00197 gcdDA00197.contig.11, whole genome shotgun sequence

⇒Summary: seq-len = 460172 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56916-57410 bp 2 Locus 2: 148063-149517 bp 3 Locus 3: 286939-287827 bp Zoom in on locus 1 x8 Zoom in on locus 2 x7 x7 Zoom in on locus 3 x14 CRISPR array Location: 56916-57410 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 56916-57410 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 148063-148490 bp Num of repeats: 7 Spacers: s8-s13 CRISPR array Location: 148063-148490 bp Num of repeats: 7 Spacers: s8-s13 CRISPR array Location: 149093-149517 bp Num of repeats: 7 Spacers: s14-s19 CRISPR array Location: 149093-149517 bp Num of repeats: 7 Spacers: s14-s19 CRISPR array Location: 286939-287827 bp Num of repeats: 14 Spacers: s20-s32 CRISPR array Location: 286939-287827 bp Num of repeats: 14 Spacers: s20-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56916-57410 bp]: array | spacers
           [Locus range 148063-148490 bp]: array | spacers
           [Locus range 149093-149517 bp]: array | spacers
           [Locus range 286939-287827 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVJR01000014.1 Clostridioides difficile DA00197 gcdDA00197.contig.13, whole genome shotgun sequence

⇒Summary: seq-len = 748619 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 257101-257856 bp 2 Locus 2: 423377-431714 bp 3 Locus 3: 504939-505895 bp Zoom in on locus 1 x12 Zoom in on locus 2 Zoom in on locus 3 x15 CRISPR array Location: 257101-257856 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 257101-257856 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 423377-425785 bp Gene: cd09693:cas5 Type: Type-I Location: 425812-426618 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 426634-427647 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 427666-429132 bp Gene: pfam01881:cas6 Type: other Location: 429137-429874 bp Gene: unk Type: unknown Location: 429975-430151 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 430605-431714 bp CRISPR array Location: 504939-505895 bp Num of repeats: 15 Spacers: s12-s25 CRISPR array Location: 504939-505895 bp Num of repeats: 15 Spacers: s12-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 257101-257856 bp]: array | spacers
           [Locus range 504939-505895 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVJR01000015.1 Clostridioides difficile DA00197 gcdDA00197.contig.14, whole genome shotgun sequence

⇒Summary: seq-len = 453825 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 278689-289966 bp Zoom in on locus 1 x27 CRISPR array Location: 278689-280428 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 278689-280428 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09725:cas2 Type: universal Location: 280612-280878 bp Gene: cd09722:cas1 Type: universal Location: 280881-281861 bp Gene: pfam01930:cas4 Type: Type-I Location: 281864-282382 bp Gene: COG1203:cas3 Type: Type-I Location: 282430-284751 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 284762-285463 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 285465-286379 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 286381-288231 bp Gene: pfam01881:cas6 Type: other Location: 288237-289031 bp Gene: pfam13280:WYL Type: other Location: 289052-289966 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 278689-280428 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVJR01000006.1 Clostridioides difficile DA00197 gcdDA00197.contig.5, whole genome shotgun sequence

⇒Summary: seq-len = 410077 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 402771-410062 bp Zoom in on locus 1 Gene: cd09639:cas3 Type: Type-I Location: 402771-404384 bp Gene: COG2378:WYL Type: other Location: 404659-406644 bp Gene: unk Type: unknown Location: 406649-406846 bp Gene: unk Type: unknown Location: 407541-407786 bp Gene: pfam00078:RT Type: other Location: 408221-410062 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVJR01000013.1 Clostridioides difficile DA00197 gcdDA00197.contig.12, whole genome shotgun sequence

⇒Summary: seq-len = 253874 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 155058-155219 bp Zoom in on locus 1 x3 CRISPR array Location: 155058-155219 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 155058-155219 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 155058-155219 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVJR01000011.1 Clostridioides difficile DA00197 gcdDA00197.contig.10, whole genome shotgun sequence

⇒Summary: seq-len = 451615 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 391717-392931 bp Zoom in on locus 1 x19 CRISPR array Location: 391717-392931 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 391717-392931 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 391717-392931 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)