CRISPRone

CRISPRone report for GCA_000450425.2_ASM45042v2

♦ Seq 1: AVJT01000039.1 Clostridioides difficile DA00210 gcdDA00210.contig.44, whole genome shotgun sequence

⇒Summary: seq-len = 12129 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3753-8289 bp Zoom in on locus 1 x6 x3 x10 CRISPR array Location: 3753-4112 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 3753-4112 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 5716-5874 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 5716-5874 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 7667-8289 bp Num of repeats: 10 Spacers: s8-s16 CRISPR array Location: 7667-8289 bp Num of repeats: 10 Spacers: s8-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3753-4112 bp]: array | spacers
           [Locus range 5716-5874 bp]: array | spacers
           [Locus range 7667-8289 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVJT01000050.1 Clostridioides difficile DA00210 gcdDA00210.contig.55, whole genome shotgun sequence

⇒Summary: seq-len = 29116 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17961-18718 bp Zoom in on locus 1 x12 CRISPR array Location: 17961-18718 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 17961-18718 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17961-18718 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVJT01000075.1 Clostridioides difficile DA00210 gcdDA00210.contig.80, whole genome shotgun sequence

⇒Summary: seq-len = 44830 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 111-468 bp Zoom in on locus 1 x6 CRISPR array Location: 111-468 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 111-468 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 111-468 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVJT01000078.1 Clostridioides difficile DA00210 gcdDA00210.contig.83, whole genome shotgun sequence

⇒Summary: seq-len = 318593 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252950-263761 bp Zoom in on locus 1 x20 CRISPR array Location: 252950-254223 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 252950-254223 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09725:cas2 Type: universal Location: 254407-254673 bp Gene: cd09722:cas1 Type: universal Location: 254676-255656 bp Gene: pfam01930:cas4 Type: Type-I Location: 255659-256177 bp Gene: COG1203:cas3 Type: Type-I Location: 256225-258546 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258557-259258 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259260-260174 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260176-262026 bp Gene: pfam01881:cas6 Type: other Location: 262032-262826 bp Gene: pfam13280:WYL Type: other Location: 262847-263761 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252950-254223 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVJT01000055.1 Clostridioides difficile DA00210 gcdDA00210.contig.60, whole genome shotgun sequence

⇒Summary: seq-len = 11237 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3705-4789 bp Zoom in on locus 1 x17 CRISPR array Location: 3705-4789 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 3705-4789 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3705-4789 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVJT01000066.1 Clostridioides difficile DA00210 gcdDA00210.contig.71, whole genome shotgun sequence

⇒Summary: seq-len = 98204 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6173-6333 bp Zoom in on locus 1 x3 CRISPR array Location: 6173-6333 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 6173-6333 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6173-6333 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVJT01000089.1 Clostridioides difficile DA00210 gcdDA00210.contig.94, whole genome shotgun sequence

⇒Summary: seq-len = 51572 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12618-12711 bp Zoom in on locus 1 x2 CRISPR array Location: 12618-12711 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 12618-12711 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12618-12711 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVJT01000049.1 Clostridioides difficile DA00210 gcdDA00210.contig.54, whole genome shotgun sequence

⇒Summary: seq-len = 188140 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 123697-124256 bp Zoom in on locus 1 x9 CRISPR array Location: 123697-124256 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 123697-124256 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 123697-124256 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVJT01000074.1 Clostridioides difficile DA00210 gcdDA00210.contig.79, whole genome shotgun sequence

⇒Summary: seq-len = 218798 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 137259-145580 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 137259-139667 bp Gene: cd09693:cas5 Type: Type-I Location: 139694-140491 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 140507-141523 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 141543-143018 bp Gene: pfam01881:cas6 Type: other Location: 143023-143760 bp Gene: unk Type: unknown Location: 143861-144037 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 144471-145580 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVJT01000072.1 Clostridioides difficile DA00210 gcdDA00210.contig.77, whole genome shotgun sequence

⇒Summary: seq-len = 81629 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78060-78676 bp Zoom in on locus 1 x10 CRISPR array Location: 78060-78676 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 78060-78676 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78060-78676 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)