CRISPRone

CRISPRone report for GCA_000450445.2_ASM45044v2

♦ Seq 1: AVJU01000058.1 Clostridioides difficile DA00211 gcdDA00211.contig.57, whole genome shotgun sequence

⇒Summary: seq-len = 138192 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60766-69100 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 60766-63174 bp Gene: cd09693:cas5 Type: Type-I Location: 63201-63998 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 64014-65027 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 65047-66513 bp Gene: pfam01881:cas6 Type: other Location: 66518-67255 bp Gene: unk Type: unknown Location: 67356-67532 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 67991-69100 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVJU01000043.1 Clostridioides difficile DA00211 gcdDA00211.contig.42, whole genome shotgun sequence

⇒Summary: seq-len = 59027 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18836-19855 bp Zoom in on locus 1 x16 CRISPR array Location: 18836-19855 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 18836-19855 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18836-19855 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVJU01000037.1 Clostridioides difficile DA00211 gcdDA00211.contig.36, whole genome shotgun sequence

⇒Summary: seq-len = 29873 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18211-19229 bp Zoom in on locus 1 x16 CRISPR array Location: 18211-19229 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 18211-19229 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18211-19229 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVJU01000035.1 Clostridioides difficile DA00211 gcdDA00211.contig.34, whole genome shotgun sequence

⇒Summary: seq-len = 125909 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61524-62016 bp Zoom in on locus 1 x8 CRISPR array Location: 61524-62016 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 61524-62016 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61524-62016 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVJU01000032.1 Clostridioides difficile DA00211 gcdDA00211.contig.31, whole genome shotgun sequence

⇒Summary: seq-len = 31082 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 859-1084 bp Zoom in on locus 1 x4 CRISPR array Location: 859-1084 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 859-1084 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 859-1084 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVJU01000050.1 Clostridioides difficile DA00211 gcdDA00211.contig.49, whole genome shotgun sequence

⇒Summary: seq-len = 53959 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 414-575 bp Zoom in on locus 1 x3 CRISPR array Location: 414-575 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 414-575 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 414-575 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVJU01000061.1 Clostridioides difficile DA00211 gcdDA00211.contig.60, whole genome shotgun sequence

⇒Summary: seq-len = 50119 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2643-3068 bp Zoom in on locus 1 x7 CRISPR array Location: 2643-3068 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 2643-3068 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2643-3068 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVJU01000049.1 Clostridioides difficile DA00211 gcdDA00211.contig.48, whole genome shotgun sequence

⇒Summary: seq-len = 103241 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 100718-101009 bp Zoom in on locus 1 x5 CRISPR array Location: 100718-101009 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 100718-101009 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 100718-101009 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)