CRISPRone

CRISPRone report for GCA_000450465.2_ASM45046v2

♦ Seq 1: AVJV01000060.1 Clostridioides difficile DA00212 gcdDA00212.contig.59, whole genome shotgun sequence

⇒Summary: seq-len = 3612 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1844-2200 bp Zoom in on locus 1 x6 CRISPR array Location: 1844-2200 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1844-2200 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1844-2200 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVJV01000041.1 Clostridioides difficile DA00212 gcdDA00212.contig.40, whole genome shotgun sequence

⇒Summary: seq-len = 29043 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18222-18449 bp Zoom in on locus 1 x4 CRISPR array Location: 18222-18449 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 18222-18449 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18222-18449 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVJV01000030.1 Clostridioides difficile DA00212 gcdDA00212.contig.29, whole genome shotgun sequence

⇒Summary: seq-len = 8080 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2867-6480 bp Zoom in on locus 1 x8 x13 CRISPR array Location: 2867-3355 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 2867-3355 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 5658-6480 bp Num of repeats: 13 Spacers: s8-s19 CRISPR array Location: 5658-6480 bp Num of repeats: 13 Spacers: s8-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2867-3355 bp]: array | spacers
           [Locus range 5658-6480 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVJV01000039.1 Clostridioides difficile DA00212 gcdDA00212.contig.38, whole genome shotgun sequence

⇒Summary: seq-len = 238111 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 178240-178661 bp Zoom in on locus 1 x7 CRISPR array Location: 178240-178661 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 178240-178661 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 178240-178661 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVJV01000032.1 Clostridioides difficile DA00212 gcdDA00212.contig.31, whole genome shotgun sequence

⇒Summary: seq-len = 134221 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62812-65443 bp Zoom in on locus 1 Gene: mkCas0093:csf3gr5 Type: Subtype-IV-A Location: 62812-63483 bp Gene: pfam03787:csm3gr7 Type: Type-III Location: 63503-64330 bp Gene: unk Type: unknown Location: 64320-64712 bp Gene: mkCas0185:csf1gr8 Type: Subtype-IV-A Location: 64715-65443 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVJV01000059.1 Clostridioides difficile DA00212 gcdDA00212.contig.58, whole genome shotgun sequence

⇒Summary: seq-len = 218808 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135920-143785 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 135920-138328 bp Gene: cd09693:cas5 Type: Type-I Location: 138355-139152 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 139168-140181 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 140201-141676 bp Gene: pfam01881:cas6 Type: other Location: 141681-142418 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 142676-143785 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVJV01000045.1 Clostridioides difficile DA00212 gcdDA00212.contig.44, whole genome shotgun sequence

⇒Summary: seq-len = 71517 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 39947-40308 bp Zoom in on locus 1 x6 CRISPR array Location: 39947-40308 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 39947-40308 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 39947-40308 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVJV01000057.1 Clostridioides difficile DA00212 gcdDA00212.contig.56, whole genome shotgun sequence

⇒Summary: seq-len = 5865 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1427-2374 bp Zoom in on locus 1 x15 CRISPR array Location: 1427-2374 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1427-2374 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1427-2374 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVJV01000051.1 Clostridioides difficile DA00212 gcdDA00212.contig.50, whole genome shotgun sequence

⇒Summary: seq-len = 55057 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23281-23442 bp Zoom in on locus 1 x3 CRISPR array Location: 23281-23442 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 23281-23442 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23281-23442 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVJV01000054.1 Clostridioides difficile DA00212 gcdDA00212.contig.53, whole genome shotgun sequence

⇒Summary: seq-len = 97316 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62295-74417 bp Zoom in on locus 1 x47 Gene: cd09725:cas2 Type: universal Location: 62295-62585 bp Gene: cd09722:cas1 Type: universal Location: 62796-63803 bp Gene: pfam01930:cas4 Type: Type-I Location: 63829-64323 bp CRISPR array Location: 64408-67475 bp Num of repeats: 47 Spacers: s1-s46 CRISPR array Location: 64408-67475 bp Num of repeats: 47 Spacers: s1-s46 Gene: cd09641:cas3HD Type: Type-I Location: 67665-70223 bp Gene: cd09693:cas5 Type: Type-I Location: 70247-70987 bp Gene: pfam05107:cas7b Type: Type-I Location: 70989-71978 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 71971-73710 bp Gene: cd09652:cas6 Type: other Location: 73722-74417 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 64408-67475 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)