CRISPRone

CRISPRone report for GCA_000450545.2_ASM45054v2

♦ Seq 1: AVJZ01000060.1 Clostridioides difficile DA00238 gcdDA00238.contig.59, whole genome shotgun sequence

⇒Summary: seq-len = 8495 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4728-5149 bp Zoom in on locus 1 x7 CRISPR array Location: 4728-5149 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 4728-5149 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4728-5149 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVJZ01000042.1 Clostridioides difficile DA00238 gcdDA00238.contig.41, whole genome shotgun sequence

⇒Summary: seq-len = 29331 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18237-18729 bp Zoom in on locus 1 x8 CRISPR array Location: 18237-18729 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 18237-18729 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18237-18729 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVJZ01000079.1 Clostridioides difficile DA00238 gcdDA00238.contig.79, whole genome shotgun sequence

⇒Summary: seq-len = 228289 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113764-114648 bp Zoom in on locus 1 x14 CRISPR array Location: 113764-114648 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 113764-114648 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 113764-114648 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVJZ01000045.1 Clostridioides difficile DA00238 gcdDA00238.contig.44, whole genome shotgun sequence

⇒Summary: seq-len = 73193 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18847-20192 bp Zoom in on locus 1 x21 CRISPR array Location: 18847-20192 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 18847-20192 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18847-20192 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVJZ01000029.1 Clostridioides difficile DA00238 gcdDA00238.contig.28, whole genome shotgun sequence

⇒Summary: seq-len = 9141 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1253-6854 bp Zoom in on locus 1 x2 x5 x4 CRISPR array Location: 1253-1345 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1253-1345 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 3693-3985 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 3693-3985 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 6629-6854 bp Num of repeats: 4 Spacers: s6-s8 CRISPR array Location: 6629-6854 bp Num of repeats: 4 Spacers: s6-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1253-1345 bp]: array | spacers
           [Locus range 3693-3985 bp]: array | spacers
           [Locus range 6629-6854 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVJZ01000063.1 Clostridioides difficile DA00238 gcdDA00238.contig.63, whole genome shotgun sequence

⇒Summary: seq-len = 212744 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135817-143682 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 135817-138225 bp Gene: cd09693:cas5 Type: Type-I Location: 138252-139049 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 139065-140078 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 140098-141573 bp Gene: pfam01881:cas6 Type: other Location: 141578-142315 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 142573-143682 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVJZ01000036.1 Clostridioides difficile DA00238 gcdDA00238.contig.35, whole genome shotgun sequence

⇒Summary: seq-len = 200580 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185778-185939 bp Zoom in on locus 1 x3 CRISPR array Location: 185778-185939 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 185778-185939 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185778-185939 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVJZ01000070.1 Clostridioides difficile DA00238 gcdDA00238.contig.70, whole genome shotgun sequence

⇒Summary: seq-len = 268045 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 248341-258454 bp Zoom in on locus 1 x9 CRISPR array Location: 248341-248889 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 248341-248889 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 249073-249339 bp Gene: cd09722:cas1 Type: universal Location: 249342-250322 bp Gene: pfam01930:cas4 Type: Type-I Location: 250406-250843 bp Gene: COG1203:cas3 Type: Type-I Location: 250891-253212 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 253223-253924 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 253926-254840 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 254842-256719 bp Gene: pfam01881:cas6 Type: other Location: 256725-257519 bp Gene: pfam13280:WYL Type: other Location: 257540-258454 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 248341-248889 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)