CRISPRone

CRISPRone report for GCA_000450565.2_ASM45056v2

♦ Seq 1: AVKA01000010.1 Clostridioides difficile DA00244 gcdDA00244.contig.9, whole genome shotgun sequence

⇒Summary: seq-len = 1922998 bp; # of CRISPR array = 7; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 188680-189835 bp 2 Locus 2: 429724-430942 bp 3 Locus 3: 541245-541606 bp 4 Locus 4: 620959-621184 bp 5 Locus 5: 761077-763621 bp 6 Locus 6: 1427592-1429143 bp 7 Locus 7: 1594506-1602921 bp 8 Locus 8: 1676201-1676890 bp Zoom in on locus 1 x18 Zoom in on locus 2 x19 Zoom in on locus 3 x6 Zoom in on locus 4 x4 Zoom in on locus 5 x39 Zoom in on locus 6 x24 Zoom in on locus 7 Zoom in on locus 8 x11 CRISPR array Location: 188680-189835 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 188680-189835 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 429724-430942 bp Num of repeats: 19 Spacers: s18-s35 CRISPR array Location: 429724-430942 bp Num of repeats: 19 Spacers: s18-s35 CRISPR array Location: 541245-541606 bp Num of repeats: 6 Spacers: s36-s40 CRISPR array Location: 541245-541606 bp Num of repeats: 6 Spacers: s36-s40 CRISPR array Location: 620959-621184 bp Num of repeats: 4 Spacers: s41-s43 CRISPR array Location: 620959-621184 bp Num of repeats: 4 Spacers: s41-s43 CRISPR array Location: 761077-763621 bp Num of repeats: 39 Spacers: s44-s81 CRISPR array Location: 761077-763621 bp Num of repeats: 39 Spacers: s44-s81 CRISPR array Location: 1427592-1429143 bp Num of repeats: 24 Spacers: s82-s104 CRISPR array Location: 1427592-1429143 bp Num of repeats: 24 Spacers: s82-s104 Gene: cd09641:cas3HD Type: Type-I Location: 1594506-1596914 bp Gene: cd09693:cas5 Type: Type-I Location: 1596941-1597738 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1597754-1598767 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1598787-1600262 bp Gene: pfam01881:cas6 Type: other Location: 1600267-1601004 bp Gene: unk Type: unknown Location: 1601202-1601378 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1601812-1602921 bp CRISPR array Location: 1676201-1676890 bp Num of repeats: 11 Spacers: s105-s114 CRISPR array Location: 1676201-1676890 bp Num of repeats: 11 Spacers: s105-s114 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 188680-189835 bp]: array | spacers
           [Locus range 429724-430942 bp]: array | spacers
           [Locus range 541245-541606 bp]: array | spacers
           [Locus range 620959-621184 bp]: array | spacers
           [Locus range 761077-763621 bp]: array | spacers
           [Locus range 1427592-1429143 bp]: array | spacers
           [Locus range 1676201-1676890 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVKA01000011.1 Clostridioides difficile DA00244 gcdDA00244.contig.10, whole genome shotgun sequence

⇒Summary: seq-len = 761856 bp; # of CRISPR array = 2; # of cas gene = 14  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 250395-262419 bp 2 Locus 2: 461736-468753 bp Zoom in on locus 1 x38 Zoom in on locus 2 x13 CRISPR array Location: 250395-252854 bp Num of repeats: 38 Spacers: s1-s37 CRISPR array Location: 250395-252854 bp Num of repeats: 38 Spacers: s1-s37 Gene: cd09725:cas2 Type: universal Location: 253038-253304 bp Gene: cd09722:cas1 Type: universal Location: 253307-254287 bp Gene: pfam01930:cas4 Type: Type-I Location: 254290-254808 bp Gene: cd09641:cas3HD Type: Type-I Location: 254856-257177 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 257188-257889 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 257891-258805 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 258807-260684 bp Gene: pfam01881:cas6 Type: other Location: 260690-261484 bp Gene: pfam13280:WYL Type: other Location: 261505-262419 bp CRISPR array Location: 461736-462551 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 461736-462551 bp Num of repeats: 13 Spacers: s38-s49 Gene: COG1203:cas3 Type: Type-I Location: 463117-465099 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 465110-466180 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 466201-467349 bp Gene: pfam01881:cas6 Type: other Location: 467351-468115 bp Gene: cd09693:cas5 Type: Type-I Location: 468106-468753 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 250395-252854 bp]: array | spacers
           [Locus range 461736-462551 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)