CRISPRone

CRISPRone report for GCA_000450585.2_ASM45058v2

♦ Seq 1: AVKB01000119.1 Clostridioides difficile DA00245 gcdDA00245.contig.121, whole genome shotgun sequence

⇒Summary: seq-len = 15710 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6139-6896 bp Zoom in on locus 1 x12 CRISPR array Location: 6139-6896 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 6139-6896 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6139-6896 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVKB01000226.1 Clostridioides difficile DA00245 gcdDA00245.contig.229, whole genome shotgun sequence

⇒Summary: seq-len = 48167 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3612-3970 bp Zoom in on locus 1 x6 CRISPR array Location: 3612-3970 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 3612-3970 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3612-3970 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVKB01000220.1 Clostridioides difficile DA00245 gcdDA00245.contig.223, whole genome shotgun sequence

⇒Summary: seq-len = 34879 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28277-34778 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 28277-30685 bp Gene: cd09693:cas5 Type: Type-I Location: 30712-31509 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31525-32541 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32561-34036 bp Gene: pfam01881:cas6 Type: other Location: 34041-34778 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVKB01000132.1 Clostridioides difficile DA00245 gcdDA00245.contig.135, whole genome shotgun sequence

⇒Summary: seq-len = 4656 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3835-4654 bp Zoom in on locus 1 x13 CRISPR array Location: 3835-4654 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 3835-4654 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3835-4654 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVKB01000271.1 Clostridioides difficile DA00245 gcdDA00245.contig.274, whole genome shotgun sequence

⇒Summary: seq-len = 19519 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8634-8727 bp Zoom in on locus 1 x2 CRISPR array Location: 8634-8727 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 8634-8727 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8634-8727 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVKB01000258.1 Clostridioides difficile DA00245 gcdDA00245.contig.261, whole genome shotgun sequence

⇒Summary: seq-len = 33394 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12620-23757 bp Zoom in on locus 1 x25 CRISPR array Location: 12620-14219 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 12620-14219 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 14403-14669 bp Gene: cd09722:cas1 Type: universal Location: 14672-15652 bp Gene: pfam01930:cas4 Type: Type-I Location: 15655-16173 bp Gene: COG1203:cas3 Type: Type-I Location: 16221-18542 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 18553-19254 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 19256-20170 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 20172-22022 bp Gene: pfam01881:cas6 Type: other Location: 22028-22822 bp Gene: pfam13280:WYL Type: other Location: 22843-23757 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 12620-14219 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVKB01000225.1 Clostridioides difficile DA00245 gcdDA00245.contig.228, whole genome shotgun sequence

⇒Summary: seq-len = 1028 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 603-960 bp Zoom in on locus 1 x6 CRISPR array Location: 603-960 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 603-960 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 603-960 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVKB01000208.1 Clostridioides difficile DA00245 gcdDA00245.contig.211, whole genome shotgun sequence

⇒Summary: seq-len = 6949 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4804-4964 bp Zoom in on locus 1 x3 CRISPR array Location: 4804-4964 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 4804-4964 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4804-4964 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVKB01000334.1 Clostridioides difficile DA00245 gcdDA00245.contig.352, whole genome shotgun sequence

⇒Summary: seq-len = 2282 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 571-795 bp Zoom in on locus 1 x4 CRISPR array Location: 571-795 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 571-795 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 571-795 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVKB01000207.1 Clostridioides difficile DA00245 gcdDA00245.contig.210, whole genome shotgun sequence

⇒Summary: seq-len = 5358 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1546-2162 bp Zoom in on locus 1 x10 CRISPR array Location: 1546-2162 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 1546-2162 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1546-2162 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVKB01000112.1 Clostridioides difficile DA00245 gcdDA00245.contig.114, whole genome shotgun sequence

⇒Summary: seq-len = 15902 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9499-10058 bp Zoom in on locus 1 x9 CRISPR array Location: 9499-10058 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 9499-10058 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9499-10058 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)