CRISPRone

CRISPRone report for GCA_000450605.2_ASM45060v2

♦ Seq 1: AVKC01000043.1 Clostridioides difficile DA00246 gcdDA00246.contig.42, whole genome shotgun sequence

⇒Summary: seq-len = 344118 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97657-98407 bp Zoom in on locus 1 x12 CRISPR array Location: 97657-98407 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 97657-98407 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 97657-98407 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVKC01000036.1 Clostridioides difficile DA00246 gcdDA00246.contig.35, whole genome shotgun sequence

⇒Summary: seq-len = 32994 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1477-1638 bp Zoom in on locus 1 x3 CRISPR array Location: 1477-1638 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1477-1638 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1477-1638 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVKC01000038.1 Clostridioides difficile DA00246 gcdDA00246.contig.37, whole genome shotgun sequence

⇒Summary: seq-len = 166191 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62308-74364 bp Zoom in on locus 1 x46 Gene: cd09725:cas2 Type: universal Location: 62308-62598 bp Gene: cd09722:cas1 Type: universal Location: 62809-63816 bp Gene: pfam01930:cas4 Type: Type-I Location: 63842-64336 bp CRISPR array Location: 64421-67422 bp Num of repeats: 46 Spacers: s1-s45 CRISPR array Location: 64421-67422 bp Num of repeats: 46 Spacers: s1-s45 Gene: cd09641:cas3HD Type: Type-I Location: 67612-70170 bp Gene: cd09693:cas5 Type: Type-I Location: 70194-70934 bp Gene: pfam05107:cas7b Type: Type-I Location: 70936-71925 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 71918-73657 bp Gene: cd09652:cas6 Type: other Location: 73669-74364 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 64421-67422 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVKC01000033.1 Clostridioides difficile DA00246 gcdDA00246.contig.32, whole genome shotgun sequence

⇒Summary: seq-len = 93386 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 39962-40323 bp Zoom in on locus 1 x6 CRISPR array Location: 39962-40323 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 39962-40323 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 39962-40323 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVKC01000031.1 Clostridioides difficile DA00246 gcdDA00246.contig.30, whole genome shotgun sequence

⇒Summary: seq-len = 28875 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18207-18434 bp Zoom in on locus 1 x4 CRISPR array Location: 18207-18434 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 18207-18434 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18207-18434 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVKC01000029.1 Clostridioides difficile DA00246 gcdDA00246.contig.28, whole genome shotgun sequence

⇒Summary: seq-len = 453508 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185185-185478 bp 2 Locus 2: 393617-394038 bp Zoom in on locus 1 x5 Zoom in on locus 2 x7 CRISPR array Location: 185185-185478 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 185185-185478 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 393617-394038 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 393617-394038 bp Num of repeats: 7 Spacers: s5-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185185-185478 bp]: array | spacers
           [Locus range 393617-394038 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVKC01000041.1 Clostridioides difficile DA00246 gcdDA00246.contig.40, whole genome shotgun sequence

⇒Summary: seq-len = 216577 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135962-143827 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 135962-138370 bp Gene: cd09693:cas5 Type: Type-I Location: 138397-139194 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 139210-140223 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 140243-141718 bp Gene: pfam01881:cas6 Type: other Location: 141723-142460 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 142718-143827 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVKC01000039.1 Clostridioides difficile DA00246 gcdDA00246.contig.38, whole genome shotgun sequence

⇒Summary: seq-len = 2666 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 243-800 bp Zoom in on locus 1 x9 CRISPR array Location: 243-800 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 243-800 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 243-800 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)