CRISPRone

CRISPRone report for GCA_000450625.2_ASM45062v2

♦ Seq 1: AVLP01000004.1 Clostridioides difficile P6 gcdP6.contig.4, whole genome shotgun sequence

⇒Summary: seq-len = 3676 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1381-1674 bp Zoom in on locus 1 x5 CRISPR array Location: 1381-1674 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1381-1674 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1381-1674 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVLP01000064.1 Clostridioides difficile P6 gcdP6.contig.89, whole genome shotgun sequence

⇒Summary: seq-len = 1601 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88-381 bp Zoom in on locus 1 x5 CRISPR array Location: 88-381 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 88-381 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 88-381 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVLP01000129.1 Clostridioides difficile P6 gcdP6.contig.154, whole genome shotgun sequence

⇒Summary: seq-len = 133178 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56208-64073 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 56208-58616 bp Gene: cd09693:cas5 Type: Type-I Location: 58643-59440 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 59456-60469 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 60489-61964 bp Gene: pfam01881:cas6 Type: other Location: 61969-62706 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 62964-64073 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVLP01000126.1 Clostridioides difficile P6 gcdP6.contig.151, whole genome shotgun sequence

⇒Summary: seq-len = 2309 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 266-687 bp Zoom in on locus 1 x7 CRISPR array Location: 266-687 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 266-687 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 266-687 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVLP01000111.1 Clostridioides difficile P6 gcdP6.contig.136, whole genome shotgun sequence

⇒Summary: seq-len = 19214 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6181-6274 bp Zoom in on locus 1 x2 CRISPR array Location: 6181-6274 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 6181-6274 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6181-6274 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVLP01000078.1 Clostridioides difficile P6 gcdP6.contig.103, whole genome shotgun sequence

⇒Summary: seq-len = 99123 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34531-35350 bp Zoom in on locus 1 x13 CRISPR array Location: 34531-35350 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 34531-35350 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 34531-35350 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVLP01000092.1 Clostridioides difficile P6 gcdP6.contig.117, whole genome shotgun sequence

⇒Summary: seq-len = 3868 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2287-3698 bp Zoom in on locus 1 x22 CRISPR array Location: 2287-3698 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 2287-3698 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2287-3698 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVLP01000082.1 Clostridioides difficile P6 gcdP6.contig.107, whole genome shotgun sequence

⇒Summary: seq-len = 14002 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3039-3531 bp Zoom in on locus 1 x8 CRISPR array Location: 3039-3531 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3039-3531 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3039-3531 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVLP01000063.1 Clostridioides difficile P6 gcdP6.contig.88, whole genome shotgun sequence

⇒Summary: seq-len = 24590 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 508-669 bp Zoom in on locus 1 x3 CRISPR array Location: 508-669 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 508-669 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 508-669 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVLP01000137.1 Clostridioides difficile P6 gcdP6.contig.162, whole genome shotgun sequence

⇒Summary: seq-len = 86495 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22650-32763 bp Zoom in on locus 1 x9 CRISPR array Location: 22650-23198 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 22650-23198 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 23382-23648 bp Gene: cd09722:cas1 Type: universal Location: 23651-24631 bp Gene: pfam01930:cas4 Type: Type-I Location: 24715-25152 bp Gene: COG1203:cas3 Type: Type-I Location: 25200-27521 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 27532-28233 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 28235-29149 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 29151-31028 bp Gene: pfam01881:cas6 Type: other Location: 31034-31828 bp Gene: pfam13280:WYL Type: other Location: 31849-32763 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 22650-23198 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVLP01000130.1 Clostridioides difficile P6 gcdP6.contig.155, whole genome shotgun sequence

⇒Summary: seq-len = 110644 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 107-602 bp Zoom in on locus 1 x8 CRISPR array Location: 107-602 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 107-602 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 107-602 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: AVLP01000065.1 Clostridioides difficile P6 gcdP6.contig.90, whole genome shotgun sequence

⇒Summary: seq-len = 10817 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 665-758 bp Zoom in on locus 1 x2 CRISPR array Location: 665-758 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 665-758 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 665-758 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)