CRISPRone

CRISPRone report for GCA_000450645.2_ASM45064v2

♦ Seq 1: AVLY01000023.1 Clostridioides difficile P21 gcdP21.contig.22, whole genome shotgun sequence

⇒Summary: seq-len = 30417 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13321-17879 bp Zoom in on locus 1 x5 x4 x8 CRISPR array Location: 13321-13613 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 13321-13613 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 15296-15522 bp Num of repeats: 4 Spacers: s5-s7 CRISPR array Location: 15296-15522 bp Num of repeats: 4 Spacers: s5-s7 CRISPR array Location: 17384-17879 bp Num of repeats: 8 Spacers: s8-s14 CRISPR array Location: 17384-17879 bp Num of repeats: 8 Spacers: s8-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13321-13613 bp]: array | spacers
           [Locus range 15296-15522 bp]: array | spacers
           [Locus range 17384-17879 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVLY01000029.1 Clostridioides difficile P21 gcdP21.contig.28, whole genome shotgun sequence

⇒Summary: seq-len = 188808 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124527-125086 bp Zoom in on locus 1 x9 CRISPR array Location: 124527-125086 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 124527-125086 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124527-125086 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVLY01000033.1 Clostridioides difficile P21 gcdP21.contig.32, whole genome shotgun sequence

⇒Summary: seq-len = 69122 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3968-5118 bp Zoom in on locus 1 x18 CRISPR array Location: 3968-5118 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 3968-5118 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3968-5118 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVLY01000015.1 Clostridioides difficile P21 gcdP21.contig.14, whole genome shotgun sequence

⇒Summary: seq-len = 218943 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 92045-92206 bp Zoom in on locus 1 x3 CRISPR array Location: 92045-92206 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 92045-92206 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 92045-92206 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVLY01000044.1 Clostridioides difficile P21 gcdP21.contig.43, whole genome shotgun sequence

⇒Summary: seq-len = 530479 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 253117-264188 bp 2 Locus 2: 486230-486323 bp Zoom in on locus 1 x24 Zoom in on locus 2 x2 CRISPR array Location: 253117-254650 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 253117-254650 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09725:cas2 Type: universal Location: 254834-255100 bp Gene: cd09722:cas1 Type: universal Location: 255103-256083 bp Gene: pfam01930:cas4 Type: Type-I Location: 256086-256604 bp Gene: COG1203:cas3 Type: Type-I Location: 256652-258973 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258984-259685 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259687-260601 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260603-262453 bp Gene: pfam01881:cas6 Type: other Location: 262459-263253 bp Gene: pfam13280:WYL Type: other Location: 263274-264188 bp CRISPR array Location: 486230-486323 bp Num of repeats: 2 Spacers: s24-s24 CRISPR array Location: 486230-486323 bp Num of repeats: 2 Spacers: s24-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 253117-254650 bp]: array | spacers
           [Locus range 486230-486323 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVLY01000039.1 Clostridioides difficile P21 gcdP21.contig.38, whole genome shotgun sequence

⇒Summary: seq-len = 280792 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 154684-163005 bp 2 Locus 2: 236288-236645 bp Zoom in on locus 1 Zoom in on locus 2 x6 Gene: cd09641:cas3HD Type: Type-I Location: 154684-157092 bp Gene: cd09693:cas5 Type: Type-I Location: 157119-157916 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 157932-158948 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 158968-160443 bp Gene: pfam01881:cas6 Type: other Location: 160448-161185 bp Gene: unk Type: unknown Location: 161286-161462 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 161896-163005 bp CRISPR array Location: 236288-236645 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 236288-236645 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 236288-236645 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVLY01000028.1 Clostridioides difficile P21 gcdP21.contig.27, whole genome shotgun sequence

⇒Summary: seq-len = 218342 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3333-3950 bp Zoom in on locus 1 x10 CRISPR array Location: 3333-3950 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 3333-3950 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3333-3950 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVLY01000030.1 Clostridioides difficile P21 gcdP21.contig.29, whole genome shotgun sequence

⇒Summary: seq-len = 29544 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18217-18907 bp Zoom in on locus 1 x11 CRISPR array Location: 18217-18907 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 18217-18907 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18217-18907 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)