CRISPRone

CRISPRone report for GCA_000450665.2_ASM45066v2

♦ Seq 1: AVKJ01000057.1 Clostridioides difficile DA00307 gcdDA00307.contig.56, whole genome shotgun sequence

⇒Summary: seq-len = 1973 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 761-854 bp Zoom in on locus 1 x2 CRISPR array Location: 761-854 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 761-854 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 761-854 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVKJ01000180.1 Clostridioides difficile DA00307 gcdDA00307.contig.179, whole genome shotgun sequence

⇒Summary: seq-len = 26981 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7322-17435 bp Zoom in on locus 1 x9 CRISPR array Location: 7322-7870 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 7322-7870 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 8054-8320 bp Gene: cd09722:cas1 Type: universal Location: 8323-9303 bp Gene: pfam01930:cas4 Type: Type-I Location: 9387-9824 bp Gene: COG1203:cas3 Type: Type-I Location: 9872-12193 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 12204-12905 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 12907-13821 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 13823-15700 bp Gene: pfam01881:cas6 Type: other Location: 15706-16500 bp Gene: pfam13280:WYL Type: other Location: 16521-17435 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7322-7870 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVKJ01000078.1 Clostridioides difficile DA00307 gcdDA00307.contig.77, whole genome shotgun sequence

⇒Summary: seq-len = 29133 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22154-23038 bp Zoom in on locus 1 x14 CRISPR array Location: 22154-23038 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 22154-23038 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22154-23038 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVKJ01000157.1 Clostridioides difficile DA00307 gcdDA00307.contig.156, whole genome shotgun sequence

⇒Summary: seq-len = 6418 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4126-4621 bp Zoom in on locus 1 x8 CRISPR array Location: 4126-4621 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 4126-4621 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4126-4621 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVKJ01000148.1 Clostridioides difficile DA00307 gcdDA00307.contig.147, whole genome shotgun sequence

⇒Summary: seq-len = 4408 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1038-1459 bp Zoom in on locus 1 x7 CRISPR array Location: 1038-1459 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1038-1459 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1038-1459 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVKJ01000053.1 Clostridioides difficile DA00307 gcdDA00307.contig.52, whole genome shotgun sequence

⇒Summary: seq-len = 15693 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 500-661 bp Zoom in on locus 1 x3 CRISPR array Location: 500-661 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 500-661 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 500-661 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVKJ01000056.1 Clostridioides difficile DA00307 gcdDA00307.contig.55, whole genome shotgun sequence

⇒Summary: seq-len = 6031 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1758-4919 bp Zoom in on locus 1 x5 x4 CRISPR array Location: 1758-2050 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1758-2050 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 4694-4919 bp Num of repeats: 4 Spacers: s5-s7 CRISPR array Location: 4694-4919 bp Num of repeats: 4 Spacers: s5-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1758-2050 bp]: array | spacers
           [Locus range 4694-4919 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVKJ01000155.1 Clostridioides difficile DA00307 gcdDA00307.contig.154, whole genome shotgun sequence

⇒Summary: seq-len = 100993 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28327-36192 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 28327-30735 bp Gene: cd09693:cas5 Type: Type-I Location: 30762-31559 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31575-32588 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32608-34083 bp Gene: pfam01881:cas6 Type: other Location: 34088-34825 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 35083-36192 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVKJ01000087.1 Clostridioides difficile DA00307 gcdDA00307.contig.86, whole genome shotgun sequence

⇒Summary: seq-len = 13978 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3040-3532 bp Zoom in on locus 1 x8 CRISPR array Location: 3040-3532 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3040-3532 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3040-3532 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVKJ01000097.1 Clostridioides difficile DA00307 gcdDA00307.contig.96, whole genome shotgun sequence

⇒Summary: seq-len = 3465 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1945-3290 bp Zoom in on locus 1 x21 CRISPR array Location: 1945-3290 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 1945-3290 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1945-3290 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)