CRISPRone

CRISPRone report for GCA_000450725.2_ASM45072v2

♦ Seq 1: AVKM01000012.1 Clostridioides difficile F152 gcdF152.contig.12, whole genome shotgun sequence

⇒Summary: seq-len = 603225 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 50813-51501 bp 2 Locus 2: 226152-227498 bp 3 Locus 3: 537721-537949 bp 4 Locus 4: 582340-584524 bp Zoom in on locus 1 x11 Zoom in on locus 2 x21 Zoom in on locus 3 x4 Zoom in on locus 4 x3 x4 CRISPR array Location: 50813-51501 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 50813-51501 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 226152-227498 bp Num of repeats: 21 Spacers: s11-s30 CRISPR array Location: 226152-227498 bp Num of repeats: 21 Spacers: s11-s30 CRISPR array Location: 537721-537949 bp Num of repeats: 4 Spacers: s31-s33 CRISPR array Location: 537721-537949 bp Num of repeats: 4 Spacers: s31-s33 CRISPR array Location: 582340-582499 bp Num of repeats: 3 Spacers: s34-s35 CRISPR array Location: 582340-582499 bp Num of repeats: 3 Spacers: s34-s35 CRISPR array Location: 584300-584524 bp Num of repeats: 4 Spacers: s36-s38 CRISPR array Location: 584300-584524 bp Num of repeats: 4 Spacers: s36-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 50813-51501 bp]: array | spacers
           [Locus range 226152-227498 bp]: array | spacers
           [Locus range 537721-537949 bp]: array | spacers
           [Locus range 582340-582499 bp]: array | spacers
           [Locus range 584300-584524 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVKM01000016.1 Clostridioides difficile F152 gcdF152.contig.16, whole genome shotgun sequence

⇒Summary: seq-len = 690453 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252564-262808 bp Zoom in on locus 1 x11 CRISPR array Location: 252564-253244 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 252564-253244 bp Num of repeats: 11 Spacers: s1-s10 Gene: cd09725:cas2 Type: universal Location: 253428-253694 bp Gene: cd09722:cas1 Type: universal Location: 253697-254677 bp Gene: pfam01930:cas4 Type: Type-I Location: 254680-255198 bp Gene: COG1203:cas3 Type: Type-I Location: 255246-257567 bp Gene: cd09693:cas5 Type: Type-I Location: 257578-258279 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 258281-259195 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 259197-260336 bp Gene: unk Type: unknown Location: 260354-261073 bp Gene: pfam01881:cas6 Type: other Location: 261079-261816 bp Gene: pfam13280:WYL Type: other Location: 261894-262808 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252564-253244 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVKM01000010.1 Clostridioides difficile F152 gcdF152.contig.10, whole genome shotgun sequence

⇒Summary: seq-len = 341587 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190479-190642 bp Zoom in on locus 1 x3 CRISPR array Location: 190479-190642 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 190479-190642 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190479-190642 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVKM01000013.1 Clostridioides difficile F152 gcdF152.contig.13, whole genome shotgun sequence

⇒Summary: seq-len = 582123 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29037-30775 bp 2 Locus 2: 334357-334782 bp 3 Locus 3: 497202-505067 bp 4 Locus 4: 578348-578442 bp Zoom in on locus 1 x27 Zoom in on locus 2 x7 Zoom in on locus 3 Zoom in on locus 4 x2 CRISPR array Location: 29037-30775 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 29037-30775 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 334357-334782 bp Num of repeats: 7 Spacers: s27-s32 CRISPR array Location: 334357-334782 bp Num of repeats: 7 Spacers: s27-s32 Gene: cd09641:cas3HD Type: Type-I Location: 497202-499610 bp Gene: cd09693:cas5 Type: Type-I Location: 499637-500434 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 500450-501463 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 501483-502958 bp Gene: pfam01881:cas6 Type: other Location: 502963-503700 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 503958-505067 bp CRISPR array Location: 578348-578442 bp Num of repeats: 2 Spacers: s33-s33 CRISPR array Location: 578348-578442 bp Num of repeats: 2 Spacers: s33-s33 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 29037-30775 bp]: array | spacers
           [Locus range 334357-334782 bp]: array | spacers
           [Locus range 578348-578442 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVKM01000011.1 Clostridioides difficile F152 gcdF152.contig.11, whole genome shotgun sequence

⇒Summary: seq-len = 161061 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 101163-101587 bp Zoom in on locus 1 x7 CRISPR array Location: 101163-101587 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 101163-101587 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 101163-101587 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)