CRISPRone

CRISPRone report for GCA_000450765.2_ASM45076v2

♦ Seq 1: AVKO01000255.1 Clostridioides difficile F253 gcdF253.contig.268, whole genome shotgun sequence

⇒Summary: seq-len = 4102 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1998-2092 bp Zoom in on locus 1 x2 CRISPR array Location: 1998-2092 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1998-2092 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1998-2092 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVKO01000186.1 Clostridioides difficile F253 gcdF253.contig.198, whole genome shotgun sequence

⇒Summary: seq-len = 3551 bp; # of CRISPR array = 0; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 107-3550 bp Zoom in on locus 1 Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 107-706 bp Gene: unk Type: unknown Location: 874-1341 bp Gene: COG2378:WYL Type: other Location: 1446-2363 bp Gene: cas14:cas14 Type: Type-V Location: 3002-3550 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVKO01000197.1 Clostridioides difficile F253 gcdF253.contig.209, whole genome shotgun sequence

⇒Summary: seq-len = 27474 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 594-3105 bp Zoom in on locus 1 x6 x5 CRISPR array Location: 594-951 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 594-951 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 2815-3105 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 2815-3105 bp Num of repeats: 5 Spacers: s6-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 594-951 bp]: array | spacers
           [Locus range 2815-3105 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVKO01000191.1 Clostridioides difficile F253 gcdF253.contig.203, whole genome shotgun sequence

⇒Summary: seq-len = 11856 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2883-3177 bp Zoom in on locus 1 x5 CRISPR array Location: 2883-3177 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 2883-3177 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2883-3177 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVKO01000207.1 Clostridioides difficile F253 gcdF253.contig.219, whole genome shotgun sequence

⇒Summary: seq-len = 3040 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1930-2754 bp Zoom in on locus 1 x13 CRISPR array Location: 1930-2754 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 1930-2754 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1930-2754 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVKO01000159.1 Clostridioides difficile F253 gcdF253.contig.171, whole genome shotgun sequence

⇒Summary: seq-len = 4502 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 994-1952 bp Zoom in on locus 1 x15 CRISPR array Location: 994-1952 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 994-1952 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 994-1952 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVKO01000319.1 Clostridioides difficile F253 gcdF253.contig.333, whole genome shotgun sequence

⇒Summary: seq-len = 40325 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33706-40213 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 33706-36114 bp Gene: cd09693:cas5 Type: Type-I Location: 36141-36947 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 36963-37976 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 37996-39471 bp Gene: pfam01881:cas6 Type: other Location: 39476-40213 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVKO01000182.1 Clostridioides difficile F253 gcdF253.contig.194, whole genome shotgun sequence

⇒Summary: seq-len = 27071 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20482-21169 bp Zoom in on locus 1 x11 CRISPR array Location: 20482-21169 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 20482-21169 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20482-21169 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVKO01000391.1 Clostridioides difficile F253 gcdF253.contig.405, whole genome shotgun sequence

⇒Summary: seq-len = 37508 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19319-25851 bp Zoom in on locus 1 x10 CRISPR array Location: 19319-19941 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 19319-19941 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 20194-22179 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 22190-23260 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 23281-24447 bp Gene: pfam01881:cas6 Type: other Location: 24449-25213 bp Gene: cd09693:cas5 Type: Type-I Location: 25204-25851 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19319-19941 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVKO01000265.1 Clostridioides difficile F253 gcdF253.contig.279, whole genome shotgun sequence

⇒Summary: seq-len = 13760 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1947-2572 bp Zoom in on locus 1 x10 CRISPR array Location: 1947-2572 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 1947-2572 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1947-2572 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVKO01000372.1 Clostridioides difficile F253 gcdF253.contig.386, whole genome shotgun sequence

⇒Summary: seq-len = 12040 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 664-11846 bp Zoom in on locus 1 x25 CRISPR array Location: 664-2281 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 664-2281 bp Num of repeats: 25 Spacers: s1-s24 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 1510-1743 bp Gene: unk Type: unknown Location: 1965-2132 bp Gene: cd09725:cas2 Type: universal Location: 2465-2731 bp Gene: cd09722:cas1 Type: universal Location: 2734-3714 bp Gene: pfam01930:cas4 Type: Type-I Location: 3717-4235 bp Gene: COG1203:cas3 Type: Type-I Location: 4283-6604 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 6615-7316 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 7318-8232 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 8234-10111 bp Gene: pfam01881:cas6 Type: other Location: 10117-10911 bp Gene: pfam13280:WYL Type: other Location: 10932-11846 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 664-2281 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)