CRISPRone

CRISPRone report for GCA_000450785.2_ASM45078v2

♦ Seq 1: AVKP01000040.1 Clostridioides difficile F314 gcdF314.contig.39, whole genome shotgun sequence

⇒Summary: seq-len = 187244 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 65967-73842 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 65967-68375 bp Gene: cd09693:cas5 Type: Type-I Location: 68402-69208 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 69224-70237 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 70257-71732 bp Gene: pfam01881:cas6 Type: other Location: 71737-72474 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 72733-73842 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVKP01000030.1 Clostridioides difficile F314 gcdF314.contig.29, whole genome shotgun sequence

⇒Summary: seq-len = 41327 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30299-30991 bp Zoom in on locus 1 x11 CRISPR array Location: 30299-30991 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 30299-30991 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30299-30991 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVKP01000029.1 Clostridioides difficile F314 gcdF314.contig.28, whole genome shotgun sequence

⇒Summary: seq-len = 463465 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 174241-174734 bp 2 Locus 2: 382908-383002 bp Zoom in on locus 1 x8 Zoom in on locus 2 x2 CRISPR array Location: 174241-174734 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 174241-174734 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 382908-383002 bp Num of repeats: 2 Spacers: s8-s8 CRISPR array Location: 382908-383002 bp Num of repeats: 2 Spacers: s8-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 174241-174734 bp]: array | spacers
           [Locus range 382908-383002 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVKP01000036.1 Clostridioides difficile F314 gcdF314.contig.35, whole genome shotgun sequence

⇒Summary: seq-len = 257485 bp; # of CRISPR array = 7; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 109605-109766 bp 2 Locus 2: 151977-158074 bp 3 Locus 3: 192642-193393 bp 4 Locus 4: 211466-212488 bp Zoom in on locus 1 x3 Zoom in on locus 2 x8 x3 x4 x6 Zoom in on locus 3 x12 Zoom in on locus 4 x16 CRISPR array Location: 109605-109766 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 109605-109766 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 151977-152464 bp Num of repeats: 8 Spacers: s3-s9 CRISPR array Location: 151977-152464 bp Num of repeats: 8 Spacers: s3-s9 CRISPR array Location: 154264-154424 bp Num of repeats: 3 Spacers: s10-s11 CRISPR array Location: 154264-154424 bp Num of repeats: 3 Spacers: s10-s11 CRISPR array Location: 154659-154884 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 154659-154884 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 157718-158074 bp Num of repeats: 6 Spacers: s15-s19 CRISPR array Location: 157718-158074 bp Num of repeats: 6 Spacers: s15-s19 CRISPR array Location: 192642-193393 bp Num of repeats: 12 Spacers: s20-s30 CRISPR array Location: 192642-193393 bp Num of repeats: 12 Spacers: s20-s30 CRISPR array Location: 211466-212488 bp Num of repeats: 16 Spacers: s31-s45 CRISPR array Location: 211466-212488 bp Num of repeats: 16 Spacers: s31-s45 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 109605-109766 bp]: array | spacers
           [Locus range 151977-152464 bp]: array | spacers
           [Locus range 154264-154424 bp]: array | spacers
           [Locus range 154659-154884 bp]: array | spacers
           [Locus range 157718-158074 bp]: array | spacers
           [Locus range 192642-193393 bp]: array | spacers
           [Locus range 211466-212488 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVKP01000043.1 Clostridioides difficile F314 gcdF314.contig.42, whole genome shotgun sequence

⇒Summary: seq-len = 277167 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 249258-260700 bp Zoom in on locus 1 x29 CRISPR array Location: 249258-251135 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 249258-251135 bp Num of repeats: 29 Spacers: s1-s28 Gene: cd09725:cas2 Type: universal Location: 251319-251585 bp Gene: cd09722:cas1 Type: universal Location: 251588-252568 bp Gene: pfam01930:cas4 Type: Type-I Location: 252571-253089 bp Gene: COG1203:cas3 Type: Type-I Location: 253137-255458 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 255469-256170 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 256172-257086 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 257088-258965 bp Gene: pfam01881:cas6 Type: other Location: 258971-259765 bp Gene: pfam13280:WYL Type: other Location: 259786-260700 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 249258-251135 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVKP01000032.1 Clostridioides difficile F314 gcdF314.contig.31, whole genome shotgun sequence

⇒Summary: seq-len = 42526 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17235-17460 bp Zoom in on locus 1 x4 CRISPR array Location: 17235-17460 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 17235-17460 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17235-17460 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVKP01000033.1 Clostridioides difficile F314 gcdF314.contig.32, whole genome shotgun sequence

⇒Summary: seq-len = 284064 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 133611-134033 bp Zoom in on locus 1 x7 CRISPR array Location: 133611-134033 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 133611-134033 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 133611-134033 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)