CRISPRone

CRISPRone report for GCA_000450805.2_ASM45080v2

♦ Seq 1: AVKQ01000134.1 UNVERIFIED_ORG: Clostridioides difficile F501 gcdF501.contig.138, whole genome shotgun sequence

⇒Summary: seq-len = 102256 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69211-76354 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 69211-70488 bp Gene: unk Type: unknown Location: 70485-71018 bp Gene: unk Type: unknown Location: 71066-72739 bp Gene: cd09655:casR Type: Type-I Location: 72953-74398 bp Gene: unk Type: unknown Location: 74173-75114 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 75398-76354 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVKQ01000259.1 UNVERIFIED_ORG: Clostridioides difficile F501 gcdF501.contig.265, whole genome shotgun sequence

⇒Summary: seq-len = 99541 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18018-19034 bp 2 Locus 2: 98933-99225 bp Zoom in on locus 1 x16 Zoom in on locus 2 x5 CRISPR array Location: 18018-19034 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 18018-19034 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 98933-99225 bp Num of repeats: 5 Spacers: s16-s19 CRISPR array Location: 98933-99225 bp Num of repeats: 5 Spacers: s16-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18018-19034 bp]: array | spacers
           [Locus range 98933-99225 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVKQ01000233.1 UNVERIFIED_ORG: Clostridioides difficile F501 gcdF501.contig.238, whole genome shotgun sequence

⇒Summary: seq-len = 36588 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 315-8011 bp Zoom in on locus 1 Gene: cls001593:casR Type: Type-I Location: 315-770 bp Gene: unk Type: unknown Location: 1054-2133 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2630-2899 bp Gene: unk Type: unknown Location: 2919-3503 bp Gene: unk Type: unknown Location: 3534-4529 bp Gene: cd09639:cas3 Type: Type-I Location: 4526-8011 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVKQ01000261.1 UNVERIFIED_ORG: Clostridioides difficile F501 gcdF501.contig.267, whole genome shotgun sequence

⇒Summary: seq-len = 482414 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60923-62201 bp 2 Locus 2: 379494-379786 bp Zoom in on locus 1 x20 Zoom in on locus 2 x5 CRISPR array Location: 60923-62201 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 60923-62201 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 379494-379786 bp Num of repeats: 5 Spacers: s20-s23 CRISPR array Location: 379494-379786 bp Num of repeats: 5 Spacers: s20-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 60923-62201 bp]: array | spacers
           [Locus range 379494-379786 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVKQ01000263.1 UNVERIFIED_ORG: Clostridioides difficile F501 gcdF501.contig.269, whole genome shotgun sequence

⇒Summary: seq-len = 160279 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 89751-97616 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 89751-92159 bp Gene: cd09693:cas5 Type: Type-I Location: 92186-92983 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 92999-94012 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 94032-95507 bp Gene: pfam01881:cas6 Type: other Location: 95512-96249 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 96507-97616 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVKQ01000262.1 UNVERIFIED_ORG: Clostridioides difficile F501 gcdF501.contig.268, whole genome shotgun sequence

⇒Summary: seq-len = 317727 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 255231-255652 bp Zoom in on locus 1 x7 CRISPR array Location: 255231-255652 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 255231-255652 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 255231-255652 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVKQ01000260.1 UNVERIFIED_ORG: Clostridioides difficile F501 gcdF501.contig.266, whole genome shotgun sequence

⇒Summary: seq-len = 92461 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15988-16280 bp Zoom in on locus 1 x5 CRISPR array Location: 15988-16280 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 15988-16280 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 15988-16280 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVKQ01000264.1 UNVERIFIED_ORG: Clostridioides difficile F501 gcdF501.contig.270, whole genome shotgun sequence

⇒Summary: seq-len = 65069 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25484-26433 bp Zoom in on locus 1 x15 CRISPR array Location: 25484-26433 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 25484-26433 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 25484-26433 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVKQ01000257.1 UNVERIFIED_ORG: Clostridioides difficile F501 gcdF501.contig.263, whole genome shotgun sequence

⇒Summary: seq-len = 142642 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 95225-96504 bp Zoom in on locus 1 x20 CRISPR array Location: 95225-96504 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 95225-96504 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 95225-96504 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)