CRISPRone

CRISPRone report for GCA_000450825.2_ASM45082v2

♦ Seq 1: AVKR01000021.1 Clostridioides difficile Y10 gcdY10.contig.20, whole genome shotgun sequence

⇒Summary: seq-len = 267966 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62322-74378 bp 2 Locus 2: 263881-264631 bp Zoom in on locus 1 x46 Zoom in on locus 2 x12 Gene: cd09725:cas2 Type: universal Location: 62322-62612 bp Gene: cd09722:cas1 Type: universal Location: 62823-63830 bp Gene: pfam01930:cas4 Type: Type-I Location: 63856-64350 bp CRISPR array Location: 64435-67436 bp Num of repeats: 46 Spacers: s1-s45 CRISPR array Location: 64435-67436 bp Num of repeats: 46 Spacers: s1-s45 Gene: cd09641:cas3HD Type: Type-I Location: 67626-70184 bp Gene: cd09693:cas5 Type: Type-I Location: 70208-70948 bp Gene: pfam05107:cas7b Type: Type-I Location: 70950-71939 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 71932-73671 bp Gene: cd09652:cas6 Type: other Location: 73683-74378 bp CRISPR array Location: 263881-264631 bp Num of repeats: 12 Spacers: s46-s56 CRISPR array Location: 263881-264631 bp Num of repeats: 12 Spacers: s46-s56 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 64435-67436 bp]: array | spacers
           [Locus range 263881-264631 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVKR01000023.1 Clostridioides difficile Y10 gcdY10.contig.22, whole genome shotgun sequence

⇒Summary: seq-len = 480313 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 153827-161692 bp 2 Locus 2: 234940-235497 bp Zoom in on locus 1 Zoom in on locus 2 x9 Gene: cd09641:cas3HD Type: Type-I Location: 153827-156235 bp Gene: cd09693:cas5 Type: Type-I Location: 156262-157059 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 157075-158088 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 158108-159583 bp Gene: pfam01881:cas6 Type: other Location: 159588-160325 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 160583-161692 bp CRISPR array Location: 234940-235497 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 234940-235497 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 234940-235497 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVKR01000016.1 Clostridioides difficile Y10 gcdY10.contig.15, whole genome shotgun sequence

⇒Summary: seq-len = 457851 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185386-185679 bp 2 Locus 2: 393821-394242 bp Zoom in on locus 1 x5 Zoom in on locus 2 x7 CRISPR array Location: 185386-185679 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 185386-185679 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 393821-394242 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 393821-394242 bp Num of repeats: 7 Spacers: s5-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185386-185679 bp]: array | spacers
           [Locus range 393821-394242 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVKR01000020.1 Clostridioides difficile Y10 gcdY10.contig.19, whole genome shotgun sequence

⇒Summary: seq-len = 93515 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1183-1344 bp Zoom in on locus 1 x3 CRISPR array Location: 1183-1344 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1183-1344 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1183-1344 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVKR01000019.1 Clostridioides difficile Y10 gcdY10.contig.18, whole genome shotgun sequence

⇒Summary: seq-len = 355368 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38236-38597 bp Zoom in on locus 1 x6 CRISPR array Location: 38236-38597 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 38236-38597 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38236-38597 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVKR01000017.1 Clostridioides difficile Y10 gcdY10.contig.16, whole genome shotgun sequence

⇒Summary: seq-len = 131391 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18219-18446 bp Zoom in on locus 1 x4 CRISPR array Location: 18219-18446 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 18219-18446 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18219-18446 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)