CRISPRone

CRISPRone report for GCA_000450865.2_ASM45086v2

♦ Seq 1: AVKT01000025.1 Clostridioides difficile Y41 gcdY41.contig.24, whole genome shotgun sequence

⇒Summary: seq-len = 93555 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1198-1359 bp Zoom in on locus 1 x3 CRISPR array Location: 1198-1359 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1198-1359 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1198-1359 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVKT01000029.1 Clostridioides difficile Y41 gcdY41.contig.28, whole genome shotgun sequence

⇒Summary: seq-len = 234951 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 154044-161909 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 154044-156452 bp Gene: cd09693:cas5 Type: Type-I Location: 156479-157276 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 157292-158305 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 158325-159800 bp Gene: pfam01881:cas6 Type: other Location: 159805-160542 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 160800-161909 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVKT01000022.1 Clostridioides difficile Y41 gcdY41.contig.21, whole genome shotgun sequence

⇒Summary: seq-len = 28666 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17968-18195 bp Zoom in on locus 1 x4 CRISPR array Location: 17968-18195 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 17968-18195 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17968-18195 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVKT01000027.1 Clostridioides difficile Y41 gcdY41.contig.26, whole genome shotgun sequence

⇒Summary: seq-len = 8874 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5040-5790 bp Zoom in on locus 1 x12 CRISPR array Location: 5040-5790 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 5040-5790 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5040-5790 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVKT01000021.1 Clostridioides difficile Y41 gcdY41.contig.20, whole genome shotgun sequence

⇒Summary: seq-len = 300625 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 873-1166 bp 2 Locus 2: 209308-209729 bp Zoom in on locus 1 x5 Zoom in on locus 2 x7 CRISPR array Location: 873-1166 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 873-1166 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 209308-209729 bp Num of repeats: 7 Spacers: s5-s10 CRISPR array Location: 209308-209729 bp Num of repeats: 7 Spacers: s5-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 873-1166 bp]: array | spacers
           [Locus range 209308-209729 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVKT01000024.1 Clostridioides difficile Y41 gcdY41.contig.23, whole genome shotgun sequence

⇒Summary: seq-len = 543470 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38243-38604 bp Zoom in on locus 1 x6 CRISPR array Location: 38243-38604 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 38243-38604 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38243-38604 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVKT01000026.1 Clostridioides difficile Y41 gcdY41.contig.25, whole genome shotgun sequence

⇒Summary: seq-len = 259106 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62312-74302 bp Zoom in on locus 1 x45 Gene: cd09725:cas2 Type: universal Location: 62312-62602 bp Gene: cd09722:cas1 Type: universal Location: 62813-63820 bp Gene: pfam01930:cas4 Type: Type-I Location: 63846-64340 bp CRISPR array Location: 64425-67360 bp Num of repeats: 45 Spacers: s1-s44 CRISPR array Location: 64425-67360 bp Num of repeats: 45 Spacers: s1-s44 Gene: cd09641:cas3HD Type: Type-I Location: 67550-70108 bp Gene: cd09693:cas5 Type: Type-I Location: 70132-70872 bp Gene: pfam05107:cas7b Type: Type-I Location: 70874-71863 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 71856-73595 bp Gene: cd09652:cas6 Type: other Location: 73607-74302 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 64425-67360 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVKT01000030.1 Clostridioides difficile Y41 gcdY41.contig.29, whole genome shotgun sequence

⇒Summary: seq-len = 2665 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 546-1036 bp Zoom in on locus 1 x8 CRISPR array Location: 546-1036 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 546-1036 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 546-1036 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)