CRISPRone

CRISPRone report for GCA_000450885.2_ASM45088v2

♦ Seq 1: AVKU01000071.1 Clostridioides difficile Y155 gcdY155.contig.71, whole genome shotgun sequence

⇒Summary: seq-len = 50924 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46158-46451 bp Zoom in on locus 1 x5 CRISPR array Location: 46158-46451 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 46158-46451 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 46158-46451 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVKU01000171.1 Clostridioides difficile Y155 gcdY155.contig.171, whole genome shotgun sequence

⇒Summary: seq-len = 105145 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28284-36149 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 28284-30692 bp Gene: cd09693:cas5 Type: Type-I Location: 30719-31516 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31532-32545 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32565-34040 bp Gene: pfam01881:cas6 Type: other Location: 34045-34782 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 35040-36149 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVKU01000082.1 Clostridioides difficile Y155 gcdY155.contig.82, whole genome shotgun sequence

⇒Summary: seq-len = 51268 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44791-45147 bp Zoom in on locus 1 x6 CRISPR array Location: 44791-45147 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 44791-45147 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44791-45147 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVKU01000058.1 Clostridioides difficile Y155 gcdY155.contig.58, whole genome shotgun sequence

⇒Summary: seq-len = 56031 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42129-45546 bp Zoom in on locus 1 x5 x13 CRISPR array Location: 42129-42420 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 42129-42420 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 44723-45546 bp Num of repeats: 13 Spacers: s5-s16 CRISPR array Location: 44723-45546 bp Num of repeats: 13 Spacers: s5-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 42129-42420 bp]: array | spacers
           [Locus range 44723-45546 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVKU01000091.1 Clostridioides difficile Y155 gcdY155.contig.91, whole genome shotgun sequence

⇒Summary: seq-len = 11951 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3039-3266 bp Zoom in on locus 1 x4 CRISPR array Location: 3039-3266 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3039-3266 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3039-3266 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVKU01000163.1 Clostridioides difficile Y155 gcdY155.contig.163, whole genome shotgun sequence

⇒Summary: seq-len = 16133 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12229-12979 bp Zoom in on locus 1 x12 CRISPR array Location: 12229-12979 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 12229-12979 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12229-12979 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVKU01000133.1 Clostridioides difficile Y155 gcdY155.contig.133, whole genome shotgun sequence

⇒Summary: seq-len = 18059 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4990-5151 bp Zoom in on locus 1 x3 CRISPR array Location: 4990-5151 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 4990-5151 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4990-5151 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVKU01000107.1 Clostridioides difficile Y155 gcdY155.contig.107, whole genome shotgun sequence

⇒Summary: seq-len = 2466 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1931-2292 bp Zoom in on locus 1 x6 CRISPR array Location: 1931-2292 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1931-2292 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1931-2292 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVKU01000229.1 Clostridioides difficile Y155 gcdY155.contig.231, whole genome shotgun sequence

⇒Summary: seq-len = 12300 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88-12078 bp Zoom in on locus 1 x45 Gene: cd09652:cas6 Type: other Location: 88-783 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 795-2534 bp Gene: pfam05107:cas7b Type: Type-I Location: 2527-3516 bp Gene: cd09693:cas5 Type: Type-I Location: 3518-4258 bp Gene: cd09641:cas3HD Type: Type-I Location: 4282-6840 bp CRISPR array Location: 7030-9966 bp Num of repeats: 45 Spacers: s1-s44 CRISPR array Location: 7030-9966 bp Num of repeats: 45 Spacers: s1-s44 Gene: pfam01930:cas4 Type: Type-I Location: 10050-10544 bp Gene: cd09722:cas1 Type: universal Location: 10570-11577 bp Gene: cd09725:cas2 Type: universal Location: 11788-12078 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7030-9966 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVKU01000172.1 Clostridioides difficile Y155 gcdY155.contig.172, whole genome shotgun sequence

⇒Summary: seq-len = 54764 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 131-688 bp Zoom in on locus 1 x9 CRISPR array Location: 131-688 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 131-688 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 131-688 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)