CRISPRone

CRISPRone report for GCA_000450925.2_ASM45092v2

♦ Seq 1: AVLL01000110.1 Clostridioides difficile P1 gcdP1.contig.110, whole genome shotgun sequence

⇒Summary: seq-len = 10805 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4204-4699 bp Zoom in on locus 1 x8 CRISPR array Location: 4204-4699 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 4204-4699 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4204-4699 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVLL01000122.1 Clostridioides difficile P1 gcdP1.contig.122, whole genome shotgun sequence

⇒Summary: seq-len = 49371 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29638-39751 bp Zoom in on locus 1 x9 CRISPR array Location: 29638-30186 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 29638-30186 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 30370-30636 bp Gene: cd09722:cas1 Type: universal Location: 30639-31619 bp Gene: pfam01930:cas4 Type: Type-I Location: 31703-32140 bp Gene: COG1203:cas3 Type: Type-I Location: 32188-34509 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 34520-35221 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 35223-36137 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 36139-38016 bp Gene: pfam01881:cas6 Type: other Location: 38022-38816 bp Gene: pfam13280:WYL Type: other Location: 38837-39751 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 29638-30186 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVLL01000087.1 Clostridioides difficile P1 gcdP1.contig.87, whole genome shotgun sequence

⇒Summary: seq-len = 17951 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 995-1088 bp Zoom in on locus 1 x2 CRISPR array Location: 995-1088 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 995-1088 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 995-1088 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVLL01000055.1 Clostridioides difficile P1 gcdP1.contig.54, whole genome shotgun sequence

⇒Summary: seq-len = 48396 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 39576-40395 bp Zoom in on locus 1 x13 CRISPR array Location: 39576-40395 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 39576-40395 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 39576-40395 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVLL01000108.1 Clostridioides difficile P1 gcdP1.contig.108, whole genome shotgun sequence

⇒Summary: seq-len = 89581 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28455-36320 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 28455-30863 bp Gene: cd09693:cas5 Type: Type-I Location: 30890-31687 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31703-32716 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32736-34211 bp Gene: pfam01881:cas6 Type: other Location: 34216-34953 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 35211-36320 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVLL01000069.1 Clostridioides difficile P1 gcdP1.contig.68, whole genome shotgun sequence

⇒Summary: seq-len = 23604 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18912-20323 bp Zoom in on locus 1 x22 CRISPR array Location: 18912-20323 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 18912-20323 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18912-20323 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVLL01000060.1 Clostridioides difficile P1 gcdP1.contig.59, whole genome shotgun sequence

⇒Summary: seq-len = 16865 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6034-6526 bp Zoom in on locus 1 x8 CRISPR array Location: 6034-6526 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 6034-6526 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6034-6526 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVLL01000102.1 Clostridioides difficile P1 gcdP1.contig.102, whole genome shotgun sequence

⇒Summary: seq-len = 7979 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4721-5142 bp Zoom in on locus 1 x7 CRISPR array Location: 4721-5142 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 4721-5142 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4721-5142 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)