CRISPRone

CRISPRone report for GCA_000450945.2_ASM45094v2

♦ Seq 1: AVLM01000147.1 Clostridioides difficile P2 gcdP2.contig.146, whole genome shotgun sequence

⇒Summary: seq-len = 105707 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28242-36588 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 28242-30650 bp Gene: cd09693:cas5 Type: Type-I Location: 30677-31474 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31490-32506 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32526-34001 bp Gene: pfam01881:cas6 Type: other Location: 34006-34743 bp Gene: unk Type: unknown Location: 34844-35020 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 35479-36588 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVLM01000067.1 Clostridioides difficile P2 gcdP2.contig.66, whole genome shotgun sequence

⇒Summary: seq-len = 9961 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1364-5144 bp Zoom in on locus 1 x2 x6 CRISPR array Location: 1364-1459 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1364-1459 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 4789-5144 bp Num of repeats: 6 Spacers: s2-s6 CRISPR array Location: 4789-5144 bp Num of repeats: 6 Spacers: s2-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1364-1459 bp]: array | spacers
           [Locus range 4789-5144 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVLM01000101.1 Clostridioides difficile P2 gcdP2.contig.100, whole genome shotgun sequence

⇒Summary: seq-len = 4743 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3976-4601 bp Zoom in on locus 1 x10 CRISPR array Location: 3976-4601 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 3976-4601 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3976-4601 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVLM01000177.1 Clostridioides difficile P2 gcdP2.contig.176, whole genome shotgun sequence

⇒Summary: seq-len = 29212 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9392-9485 bp Zoom in on locus 1 x2 CRISPR array Location: 9392-9485 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 9392-9485 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9392-9485 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVLM01000141.1 Clostridioides difficile P2 gcdP2.contig.140, whole genome shotgun sequence

⇒Summary: seq-len = 38292 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34961-35714 bp Zoom in on locus 1 x12 CRISPR array Location: 34961-35714 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 34961-35714 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 34961-35714 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVLM01000171.1 Clostridioides difficile P2 gcdP2.contig.170, whole genome shotgun sequence

⇒Summary: seq-len = 27691 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7333-18044 bp Zoom in on locus 1 x18 CRISPR array Location: 7333-8479 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 7333-8479 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09725:cas2 Type: universal Location: 8663-8929 bp Gene: cd09722:cas1 Type: universal Location: 8932-9912 bp Gene: pfam01930:cas4 Type: Type-I Location: 9915-10433 bp Gene: COG1203:cas3 Type: Type-I Location: 10481-12802 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 12813-13514 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13516-14430 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 14432-16309 bp Gene: pfam01881:cas6 Type: other Location: 16315-17109 bp Gene: pfam13280:WYL Type: other Location: 17130-18044 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7333-8479 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVLM01000086.1 Clostridioides difficile P2 gcdP2.contig.85, whole genome shotgun sequence

⇒Summary: seq-len = 10781 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4231-4654 bp Zoom in on locus 1 x7 CRISPR array Location: 4231-4654 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 4231-4654 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4231-4654 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVLM01000149.1 Clostridioides difficile P2 gcdP2.contig.148, whole genome shotgun sequence

⇒Summary: seq-len = 73386 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 279-836 bp Zoom in on locus 1 x9 CRISPR array Location: 279-836 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 279-836 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 279-836 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVLM01000164.1 Clostridioides difficile P2 gcdP2.contig.163, whole genome shotgun sequence

⇒Summary: seq-len = 14175 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10475-11029 bp Zoom in on locus 1 x9 CRISPR array Location: 10475-11029 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 10475-11029 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10475-11029 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVLM01000079.1 Clostridioides difficile P2 gcdP2.contig.78, whole genome shotgun sequence

⇒Summary: seq-len = 32636 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2006-2886 bp Zoom in on locus 1 x14 CRISPR array Location: 2006-2886 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 2006-2886 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2006-2886 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVLM01000119.1 Clostridioides difficile P2 gcdP2.contig.118, whole genome shotgun sequence

⇒Summary: seq-len = 12497 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1159-1319 bp Zoom in on locus 1 x3 CRISPR array Location: 1159-1319 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1159-1319 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1159-1319 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)