CRISPRone

CRISPRone report for GCA_000451065.2_ASM45106v2

♦ Seq 1: AVLZ01000026.1 Clostridioides difficile P23 gcdP23.contig.25, whole genome shotgun sequence

⇒Summary: seq-len = 356370 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61700-62524 bp Zoom in on locus 1 x13 CRISPR array Location: 61700-62524 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 61700-62524 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61700-62524 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVLZ01000028.1 Clostridioides difficile P23 gcdP23.contig.27, whole genome shotgun sequence

⇒Summary: seq-len = 88037 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 620-714 bp 2 Locus 2: 42335-42960 bp Zoom in on locus 1 x2 Zoom in on locus 2 x10 CRISPR array Location: 620-714 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 620-714 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 42335-42960 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 42335-42960 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 620-714 bp]: array | spacers
           [Locus range 42335-42960 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVLZ01000035.1 Clostridioides difficile P23 gcdP23.contig.34, whole genome shotgun sequence

⇒Summary: seq-len = 142150 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113725-124907 bp Zoom in on locus 1 x25 CRISPR array Location: 113725-115342 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 113725-115342 bp Num of repeats: 25 Spacers: s1-s24 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 114571-114804 bp Gene: unk Type: unknown Location: 115026-115193 bp Gene: cd09725:cas2 Type: universal Location: 115526-115792 bp Gene: cd09722:cas1 Type: universal Location: 115795-116775 bp Gene: pfam01930:cas4 Type: Type-I Location: 116778-117296 bp Gene: COG1203:cas3 Type: Type-I Location: 117344-119665 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 119676-120377 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 120379-121293 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 121295-123172 bp Gene: pfam01881:cas6 Type: other Location: 123178-123972 bp Gene: pfam13280:WYL Type: other Location: 123993-124907 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113725-115342 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVLZ01000024.1 Clostridioides difficile P23 gcdP23.contig.23, whole genome shotgun sequence

⇒Summary: seq-len = 149386 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30704-30998 bp 2 Locus 2: 123381-125892 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 x5 CRISPR array Location: 30704-30998 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 30704-30998 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 123381-123738 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 123381-123738 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 125602-125892 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 125602-125892 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30704-30998 bp]: array | spacers
           [Locus range 123381-123738 bp]: array | spacers
           [Locus range 125602-125892 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVLZ01000037.1 Clostridioides difficile P23 gcdP23.contig.36, whole genome shotgun sequence

⇒Summary: seq-len = 125937 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69992-76524 bp Zoom in on locus 1 x10 CRISPR array Location: 69992-70614 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 69992-70614 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 70867-72852 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72863-73933 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 73954-75120 bp Gene: pfam01881:cas6 Type: other Location: 75122-75886 bp Gene: cd09693:cas5 Type: Type-I Location: 75877-76524 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 69992-70614 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVLZ01000031.1 Clostridioides difficile P23 gcdP23.contig.30, whole genome shotgun sequence

⇒Summary: seq-len = 238398 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46348-54223 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 46348-48756 bp Gene: cd09693:cas5 Type: Type-I Location: 48783-49589 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 49605-50618 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 50638-52113 bp Gene: pfam01881:cas6 Type: other Location: 52118-52855 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 53114-54223 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVLZ01000023.1 Clostridioides difficile P23 gcdP23.contig.22, whole genome shotgun sequence

⇒Summary: seq-len = 289814 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1169-2127 bp 2 Locus 2: 210515-211202 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 CRISPR array Location: 1169-2127 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1169-2127 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 210515-211202 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 210515-211202 bp Num of repeats: 11 Spacers: s15-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1169-2127 bp]: array | spacers
           [Locus range 210515-211202 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)