CRISPRone

CRISPRone report for GCA_000451105.2_ASM45110v2

♦ Seq 1: AVMB01000017.1 Clostridioides difficile P25 gcdP25.contig.16, whole genome shotgun sequence

⇒Summary: seq-len = 475628 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 142617-143772 bp 2 Locus 2: 383661-384284 bp Zoom in on locus 1 x18 Zoom in on locus 2 x10 CRISPR array Location: 142617-143772 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 142617-143772 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 383661-384284 bp Num of repeats: 10 Spacers: s18-s26 CRISPR array Location: 383661-384284 bp Num of repeats: 10 Spacers: s18-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 142617-143772 bp]: array | spacers
           [Locus range 383661-384284 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVMB01000018.1 Clostridioides difficile P25 gcdP25.contig.17, whole genome shotgun sequence

⇒Summary: seq-len = 1398489 bp; # of CRISPR array = 5; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17788-18149 bp 2 Locus 2: 97503-97728 bp 3 Locus 3: 237622-240166 bp 4 Locus 4: 904144-905695 bp 5 Locus 5: 1071058-1079376 bp 6 Locus 6: 1152656-1153345 bp Zoom in on locus 1 x6 Zoom in on locus 2 x4 Zoom in on locus 3 x39 Zoom in on locus 4 x24 Zoom in on locus 5 Zoom in on locus 6 x11 CRISPR array Location: 17788-18149 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 17788-18149 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 97503-97728 bp Num of repeats: 4 Spacers: s6-s8 CRISPR array Location: 97503-97728 bp Num of repeats: 4 Spacers: s6-s8 CRISPR array Location: 237622-240166 bp Num of repeats: 39 Spacers: s9-s46 CRISPR array Location: 237622-240166 bp Num of repeats: 39 Spacers: s9-s46 CRISPR array Location: 904144-905695 bp Num of repeats: 24 Spacers: s47-s69 CRISPR array Location: 904144-905695 bp Num of repeats: 24 Spacers: s47-s69 Gene: cd09641:cas3HD Type: Type-I Location: 1071058-1073466 bp Gene: cd09693:cas5 Type: Type-I Location: 1073493-1074290 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1074306-1075319 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 1075339-1076814 bp Gene: pfam01881:cas6 Type: other Location: 1076819-1077556 bp Gene: unk Type: unknown Location: 1077657-1077833 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 1078267-1079376 bp CRISPR array Location: 1152656-1153345 bp Num of repeats: 11 Spacers: s70-s79 CRISPR array Location: 1152656-1153345 bp Num of repeats: 11 Spacers: s70-s79 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 17788-18149 bp]: array | spacers
           [Locus range 97503-97728 bp]: array | spacers
           [Locus range 237622-240166 bp]: array | spacers
           [Locus range 904144-905695 bp]: array | spacers
           [Locus range 1152656-1153345 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVMB01000019.1 Clostridioides difficile P25 gcdP25.contig.18, whole genome shotgun sequence

⇒Summary: seq-len = 28404 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6050-8235 bp Zoom in on locus 1 x5 x2 CRISPR array Location: 6050-6344 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 6050-6344 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 8142-8235 bp Num of repeats: 2 Spacers: s5-s5 CRISPR array Location: 8142-8235 bp Num of repeats: 2 Spacers: s5-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6050-6344 bp]: array | spacers
           [Locus range 8142-8235 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVMB01000020.1 Clostridioides difficile P25 gcdP25.contig.20, whole genome shotgun sequence

⇒Summary: seq-len = 901069 bp; # of CRISPR array = 2; # of cas gene = 14  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 249576-261600 bp 2 Locus 2: 460917-467934 bp Zoom in on locus 1 x38 Zoom in on locus 2 x13 CRISPR array Location: 249576-252035 bp Num of repeats: 38 Spacers: s1-s37 CRISPR array Location: 249576-252035 bp Num of repeats: 38 Spacers: s1-s37 Gene: cd09725:cas2 Type: universal Location: 252219-252485 bp Gene: cd09722:cas1 Type: universal Location: 252488-253468 bp Gene: pfam01930:cas4 Type: Type-I Location: 253471-253989 bp Gene: cd09641:cas3HD Type: Type-I Location: 254037-256358 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 256369-257070 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 257072-257986 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 257988-259865 bp Gene: pfam01881:cas6 Type: other Location: 259871-260665 bp Gene: pfam13280:WYL Type: other Location: 260686-261600 bp CRISPR array Location: 460917-461732 bp Num of repeats: 13 Spacers: s38-s49 CRISPR array Location: 460917-461732 bp Num of repeats: 13 Spacers: s38-s49 Gene: COG1203:cas3 Type: Type-I Location: 462298-464280 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 464291-465361 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 465382-466530 bp Gene: pfam01881:cas6 Type: other Location: 466532-467296 bp Gene: cd09693:cas5 Type: Type-I Location: 467287-467934 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 249576-252035 bp]: array | spacers
           [Locus range 460917-461732 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)