CRISPRone

CRISPRone report for GCA_000451145.2_ASM45114v2

♦ Seq 1: AVLB01000020.1 Clostridioides difficile Y247 gcdY247.contig.19, whole genome shotgun sequence

⇒Summary: seq-len = 82819 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 647-807 bp Zoom in on locus 1 x3 CRISPR array Location: 647-807 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 647-807 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 647-807 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVLB01000026.1 Clostridioides difficile Y247 gcdY247.contig.25, whole genome shotgun sequence

⇒Summary: seq-len = 258170 bp; # of CRISPR array = 3; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 155200-163521 bp 2 Locus 2: 253443-257934 bp Zoom in on locus 1 Zoom in on locus 2 x8 x4 x4 Gene: cd09641:cas3HD Type: Type-I Location: 155200-157608 bp Gene: cd09693:cas5 Type: Type-I Location: 157635-158432 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 158448-159464 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 159484-160959 bp Gene: pfam01881:cas6 Type: other Location: 160964-161701 bp Gene: unk Type: unknown Location: 161802-161978 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 162412-163521 bp CRISPR array Location: 253443-253937 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 253443-253937 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 255799-256024 bp Num of repeats: 4 Spacers: s8-s10 CRISPR array Location: 255799-256024 bp Num of repeats: 4 Spacers: s8-s10 CRISPR array Location: 257708-257934 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 257708-257934 bp Num of repeats: 4 Spacers: s11-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 253443-253937 bp]: array | spacers
           [Locus range 255799-256024 bp]: array | spacers
           [Locus range 257708-257934 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVLB01000011.1 Clostridioides difficile Y247 gcdY247.contig.10, whole genome shotgun sequence

⇒Summary: seq-len = 224373 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 137011-138028 bp Zoom in on locus 1 x16 CRISPR array Location: 137011-138028 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 137011-138028 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 137011-138028 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVLB01000012.1 Clostridioides difficile Y247 gcdY247.contig.11, whole genome shotgun sequence

⇒Summary: seq-len = 132946 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124532-124961 bp Zoom in on locus 1 x7 CRISPR array Location: 124532-124961 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 124532-124961 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124532-124961 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVLB01000014.1 Clostridioides difficile Y247 gcdY247.contig.13, whole genome shotgun sequence

⇒Summary: seq-len = 131718 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17933-18690 bp Zoom in on locus 1 x12 CRISPR array Location: 17933-18690 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 17933-18690 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17933-18690 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVLB01000030.1 Clostridioides difficile Y247 gcdY247.contig.29, whole genome shotgun sequence

⇒Summary: seq-len = 530080 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 253113-263857 bp 2 Locus 2: 486065-486158 bp Zoom in on locus 1 x19 Zoom in on locus 2 x2 CRISPR array Location: 253113-254319 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 253113-254319 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09725:cas2 Type: universal Location: 254503-254769 bp Gene: cd09722:cas1 Type: universal Location: 254772-255752 bp Gene: pfam01930:cas4 Type: Type-I Location: 255755-256273 bp Gene: COG1203:cas3 Type: Type-I Location: 256321-258642 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258653-259354 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259356-260270 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260272-262122 bp Gene: pfam01881:cas6 Type: other Location: 262128-262922 bp Gene: pfam13280:WYL Type: other Location: 262943-263857 bp CRISPR array Location: 486065-486158 bp Num of repeats: 2 Spacers: s19-s19 CRISPR array Location: 486065-486158 bp Num of repeats: 2 Spacers: s19-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 253113-254319 bp]: array | spacers
           [Locus range 486065-486158 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVLB01000027.1 Clostridioides difficile Y247 gcdY247.contig.26, whole genome shotgun sequence

⇒Summary: seq-len = 44997 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 300-657 bp Zoom in on locus 1 x6 CRISPR array Location: 300-657 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 300-657 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 300-657 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVLB01000016.1 Clostridioides difficile Y247 gcdY247.contig.15, whole genome shotgun sequence

⇒Summary: seq-len = 68993 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3971-4989 bp Zoom in on locus 1 x16 CRISPR array Location: 3971-4989 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 3971-4989 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3971-4989 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVLB01000024.1 Clostridioides difficile Y247 gcdY247.contig.23, whole genome shotgun sequence

⇒Summary: seq-len = 4043 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 93-709 bp Zoom in on locus 1 x10 CRISPR array Location: 93-709 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 93-709 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 93-709 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)