CRISPRone

CRISPRone report for GCA_000451165.2_ASM45116v2

♦ Seq 1: AVKY01000084.1 Clostridioides difficile Y202 gcdY202.contig.85, whole genome shotgun sequence

⇒Summary: seq-len = 4571 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12-635 bp Zoom in on locus 1 x10 CRISPR array Location: 12-635 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 12-635 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12-635 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVKY01000212.1 Clostridioides difficile Y202 gcdY202.contig.213, whole genome shotgun sequence

⇒Summary: seq-len = 7714 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5447-5607 bp Zoom in on locus 1 x3 CRISPR array Location: 5447-5607 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5447-5607 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5447-5607 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVKY01000137.1 Clostridioides difficile Y202 gcdY202.contig.138, whole genome shotgun sequence

⇒Summary: seq-len = 4588 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3709-4596 bp Zoom in on locus 1 x14 CRISPR array Location: 3709-4596 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 3709-4596 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3709-4596 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVKY01000279.1 Clostridioides difficile Y202 gcdY202.contig.280, whole genome shotgun sequence

⇒Summary: seq-len = 21982 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8576-8669 bp Zoom in on locus 1 x2 CRISPR array Location: 8576-8669 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 8576-8669 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8576-8669 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVKY01000265.1 Clostridioides difficile Y202 gcdY202.contig.266, whole genome shotgun sequence

⇒Summary: seq-len = 27916 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7307-18378 bp Zoom in on locus 1 x24 CRISPR array Location: 7307-8840 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 7307-8840 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09725:cas2 Type: universal Location: 9024-9290 bp Gene: cd09722:cas1 Type: universal Location: 9293-10273 bp Gene: pfam01930:cas4 Type: Type-I Location: 10276-10794 bp Gene: COG1203:cas3 Type: Type-I Location: 10842-13163 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 13174-13875 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13877-14791 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 14793-16643 bp Gene: pfam01881:cas6 Type: other Location: 16649-17443 bp Gene: pfam13280:WYL Type: other Location: 17464-18378 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7307-8840 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVKY01000339.1 Clostridioides difficile Y202 gcdY202.contig.353, whole genome shotgun sequence

⇒Summary: seq-len = 20392 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6695-6921 bp Zoom in on locus 1 x4 CRISPR array Location: 6695-6921 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 6695-6921 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6695-6921 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVKY01000116.1 Clostridioides difficile Y202 gcdY202.contig.117, whole genome shotgun sequence

⇒Summary: seq-len = 34752 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31926-32419 bp Zoom in on locus 1 x8 CRISPR array Location: 31926-32419 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 31926-32419 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 31926-32419 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVKY01000211.1 Clostridioides difficile Y202 gcdY202.contig.212, whole genome shotgun sequence

⇒Summary: seq-len = 37275 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33779-34395 bp Zoom in on locus 1 x10 CRISPR array Location: 33779-34395 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 33779-34395 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 33779-34395 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVKY01000126.1 Clostridioides difficile Y202 gcdY202.contig.127, whole genome shotgun sequence

⇒Summary: seq-len = 12192 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3002-3493 bp Zoom in on locus 1 x8 CRISPR array Location: 3002-3493 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3002-3493 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3002-3493 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVKY01000083.1 Clostridioides difficile Y202 gcdY202.contig.84, whole genome shotgun sequence

⇒Summary: seq-len = 4819 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 617-4822 bp Zoom in on locus 1 x7 x4 x3 CRISPR array Location: 617-1041 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 617-1041 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 2645-2868 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 2645-2868 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 4661-4822 bp Num of repeats: 3 Spacers: s10-s11 CRISPR array Location: 4661-4822 bp Num of repeats: 3 Spacers: s10-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 617-1041 bp]: array | spacers
           [Locus range 2645-2868 bp]: array | spacers
           [Locus range 4661-4822 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVKY01000225.1 Clostridioides difficile Y202 gcdY202.contig.226, whole genome shotgun sequence

⇒Summary: seq-len = 26071 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19529-26030 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 19529-21937 bp Gene: cd09693:cas5 Type: Type-I Location: 21964-22761 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 22777-23793 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 23813-25288 bp Gene: pfam01881:cas6 Type: other Location: 25293-26030 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: AVKY01000103.1 Clostridioides difficile Y202 gcdY202.contig.104, whole genome shotgun sequence

⇒Summary: seq-len = 14248 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8669-9751 bp Zoom in on locus 1 x17 CRISPR array Location: 8669-9751 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 8669-9751 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8669-9751 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: AVKY01000228.1 Clostridioides difficile Y202 gcdY202.contig.229, whole genome shotgun sequence

⇒Summary: seq-len = 44730 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 294-651 bp Zoom in on locus 1 x6 CRISPR array Location: 294-651 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 294-651 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 294-651 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)