CRISPRone

CRISPRone report for GCA_000451225.1_ASM45122v1

♦ Seq 1: AVHJ01000291.1 Clostridioides difficile CD92 gcdCD92.contig.296, whole genome shotgun sequence

⇒Summary: seq-len = 58602 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3925-4420 bp Zoom in on locus 1 x8 CRISPR array Location: 3925-4420 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3925-4420 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3925-4420 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVHJ01000019.1 Clostridioides difficile CD92 gcdCD92.contig.18, whole genome shotgun sequence

⇒Summary: seq-len = 2047 bp; # of CRISPR array = 1; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-2046 bp Zoom in on locus 1 x5 CRISPR array Location: 0-290 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 0-290 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09725:cas2 Type: universal Location: 474-740 bp Gene: cd09722:cas1 Type: universal Location: 743-1723 bp Gene: pfam01930:cas4 Type: Type-I Location: 1807-2046 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-290 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVHJ01000018.1 Clostridioides difficile CD92 gcdCD92.contig.17, whole genome shotgun sequence

⇒Summary: seq-len = 685 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 460-686 bp Zoom in on locus 1 x4 CRISPR array Location: 460-686 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 460-686 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 460-686 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVHJ01000212.1 Clostridioides difficile CD92 gcdCD92.contig.215, whole genome shotgun sequence

⇒Summary: seq-len = 3327 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1819-1912 bp Zoom in on locus 1 x2 CRISPR array Location: 1819-1912 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1819-1912 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1819-1912 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVHJ01000333.1 Clostridioides difficile CD92 gcdCD92.contig.338, whole genome shotgun sequence

⇒Summary: seq-len = 19211 bp; # of CRISPR array = 0; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 199-9580 bp Zoom in on locus 1 Gene: cd09725:cas2 Type: universal Location: 199-465 bp Gene: cd09722:cas1 Type: universal Location: 468-1448 bp Gene: pfam01930:cas4 Type: Type-I Location: 1532-1969 bp Gene: COG1203:cas3 Type: Type-I Location: 2017-4338 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 4349-5050 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 5052-5966 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 5968-7845 bp Gene: pfam01881:cas6 Type: other Location: 7851-8645 bp Gene: pfam13280:WYL Type: other Location: 8666-9580 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVHJ01000332.1 Clostridioides difficile CD92 gcdCD92.contig.337, whole genome shotgun sequence

⇒Summary: seq-len = 4158 bp; # of CRISPR array = 1; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2010-3991 bp Zoom in on locus 1 x9 CRISPR array Location: 2010-2558 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 2010-2558 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09725:cas2 Type: universal Location: 2742-3008 bp Gene: cd09722:cas1 Type: universal Location: 3011-3991 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2010-2558 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVHJ01000130.1 Clostridioides difficile CD92 gcdCD92.contig.130, whole genome shotgun sequence

⇒Summary: seq-len = 27694 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8780-8941 bp Zoom in on locus 1 x3 CRISPR array Location: 8780-8941 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 8780-8941 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8780-8941 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVHJ01000171.1 Clostridioides difficile CD92 gcdCD92.contig.173, whole genome shotgun sequence

⇒Summary: seq-len = 3495 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1948-3359 bp Zoom in on locus 1 x22 CRISPR array Location: 1948-3359 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 1948-3359 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1948-3359 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVHJ01000143.1 Clostridioides difficile CD92 gcdCD92.contig.143, whole genome shotgun sequence

⇒Summary: seq-len = 28879 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22189-23008 bp Zoom in on locus 1 x13 CRISPR array Location: 22189-23008 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 22189-23008 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22189-23008 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVHJ01000326.1 Clostridioides difficile CD92 gcdCD92.contig.331, whole genome shotgun sequence

⇒Summary: seq-len = 9835 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3650-9318 bp Zoom in on locus 1 x2 x5 x5 CRISPR array Location: 3650-3742 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 3650-3742 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 6090-6382 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 6090-6382 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 9026-9318 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 9026-9318 bp Num of repeats: 5 Spacers: s6-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3650-3742 bp]: array | spacers
           [Locus range 6090-6382 bp]: array | spacers
           [Locus range 9026-9318 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVHJ01000269.1 Clostridioides difficile CD92 gcdCD92.contig.274, whole genome shotgun sequence

⇒Summary: seq-len = 4179 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2483-2837 bp Zoom in on locus 1 x6 CRISPR array Location: 2483-2837 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 2483-2837 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2483-2837 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: AVHJ01000153.1 Clostridioides difficile CD92 gcdCD92.contig.153, whole genome shotgun sequence

⇒Summary: seq-len = 8833 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2857-3349 bp Zoom in on locus 1 x8 CRISPR array Location: 2857-3349 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 2857-3349 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2857-3349 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: AVHJ01000286.1 Clostridioides difficile CD92 gcdCD92.contig.291, whole genome shotgun sequence

⇒Summary: seq-len = 26121 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19480-25978 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 19480-21888 bp Gene: cd09693:cas5 Type: Type-I Location: 21915-22712 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 22728-23741 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 23761-25236 bp Gene: pfam01881:cas6 Type: other Location: 25241-25978 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 14: AVHJ01000270.1 Clostridioides difficile CD92 gcdCD92.contig.275, whole genome shotgun sequence

⇒Summary: seq-len = 1200 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 841-1198 bp Zoom in on locus 1 x6 CRISPR array Location: 841-1198 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 841-1198 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 841-1198 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)