CRISPRone

CRISPRone report for GCA_000451245.2_ASM45124v2

♦ Seq 1: AVHK01000025.1 Clostridioides difficile CD104 gcdCD104.contig.24, whole genome shotgun sequence

⇒Summary: seq-len = 72322 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 39981-41131 bp Zoom in on locus 1 x18 CRISPR array Location: 39981-41131 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 39981-41131 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 39981-41131 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVHK01000031.1 Clostridioides difficile CD104 gcdCD104.contig.30, whole genome shotgun sequence

⇒Summary: seq-len = 77300 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30848-32254 bp Zoom in on locus 1 x22 CRISPR array Location: 30848-32254 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 30848-32254 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30848-32254 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVHK01000038.1 Clostridioides difficile CD104 gcdCD104.contig.37, whole genome shotgun sequence

⇒Summary: seq-len = 249765 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4158-4715 bp Zoom in on locus 1 x9 CRISPR array Location: 4158-4715 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 4158-4715 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4158-4715 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVHK01000021.1 Clostridioides difficile CD104 gcdCD104.contig.20, whole genome shotgun sequence

⇒Summary: seq-len = 458990 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 186212-186571 bp 2 Locus 2: 394681-395240 bp Zoom in on locus 1 x6 Zoom in on locus 2 x9 CRISPR array Location: 186212-186571 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 186212-186571 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 394681-395240 bp Num of repeats: 9 Spacers: s6-s13 CRISPR array Location: 394681-395240 bp Num of repeats: 9 Spacers: s6-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 186212-186571 bp]: array | spacers
           [Locus range 394681-395240 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVHK01000040.1 Clostridioides difficile CD104 gcdCD104.contig.39, whole genome shotgun sequence

⇒Summary: seq-len = 128540 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 77774-89074 bp Zoom in on locus 1 x27 CRISPR array Location: 77774-79509 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 77774-79509 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09725:cas2 Type: universal Location: 79693-79959 bp Gene: cd09722:cas1 Type: universal Location: 79962-80942 bp Gene: pfam01930:cas4 Type: Type-I Location: 80945-81463 bp Gene: COG1203:cas3 Type: Type-I Location: 81511-83832 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 83843-84544 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 84546-85460 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 85462-87339 bp Gene: pfam01881:cas6 Type: other Location: 87345-88139 bp Gene: pfam13280:WYL Type: other Location: 88160-89074 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 77774-79509 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVHK01000022.1 Clostridioides difficile CD104 gcdCD104.contig.21, whole genome shotgun sequence

⇒Summary: seq-len = 29503 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17963-19053 bp Zoom in on locus 1 x17 CRISPR array Location: 17963-19053 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 17963-19053 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17963-19053 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVHK01000035.1 Clostridioides difficile CD104 gcdCD104.contig.34, whole genome shotgun sequence

⇒Summary: seq-len = 147914 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 143619-144501 bp Zoom in on locus 1 x14 CRISPR array Location: 143619-144501 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 143619-144501 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 143619-144501 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVHK01000030.1 Clostridioides difficile CD104 gcdCD104.contig.29, whole genome shotgun sequence

⇒Summary: seq-len = 137522 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 117365-117524 bp Zoom in on locus 1 x3 CRISPR array Location: 117365-117524 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 117365-117524 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 117365-117524 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVHK01000037.1 Clostridioides difficile CD104 gcdCD104.contig.36, whole genome shotgun sequence

⇒Summary: seq-len = 212926 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135961-143826 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 135961-138369 bp Gene: cd09693:cas5 Type: Type-I Location: 138396-139193 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 139209-140222 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 140242-141717 bp Gene: pfam01881:cas6 Type: other Location: 141722-142459 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 142717-143826 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)