CRISPRone

CRISPRone report for GCA_000451265.2_ASM45126v2

♦ Seq 1: AVKZ01000040.1 Clostridioides difficile Y215 gcdY215.contig.39, whole genome shotgun sequence

⇒Summary: seq-len = 2997 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1928-2816 bp Zoom in on locus 1 x14 CRISPR array Location: 1928-2816 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 1928-2816 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1928-2816 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVKZ01000071.1 Clostridioides difficile Y215 gcdY215.contig.70, whole genome shotgun sequence

⇒Summary: seq-len = 50913 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4119-5075 bp Zoom in on locus 1 x15 CRISPR array Location: 4119-5075 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 4119-5075 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4119-5075 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVKZ01000036.1 Clostridioides difficile Y215 gcdY215.contig.35, whole genome shotgun sequence

⇒Summary: seq-len = 27800 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16807-17301 bp Zoom in on locus 1 x8 CRISPR array Location: 16807-17301 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 16807-17301 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16807-17301 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVKZ01000070.1 Clostridioides difficile Y215 gcdY215.contig.69, whole genome shotgun sequence

⇒Summary: seq-len = 129553 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 52217-60554 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 52217-54625 bp Gene: cd09693:cas5 Type: Type-I Location: 54652-55458 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 55474-56487 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 56506-57972 bp Gene: pfam01881:cas6 Type: other Location: 57977-58714 bp Gene: unk Type: unknown Location: 58815-58991 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 59445-60554 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVKZ01000037.1 Clostridioides difficile Y215 gcdY215.contig.36, whole genome shotgun sequence

⇒Summary: seq-len = 98753 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80357-81811 bp Zoom in on locus 1 x7 x7 CRISPR array Location: 80357-80784 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 80357-80784 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 81387-81811 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 81387-81811 bp Num of repeats: 7 Spacers: s7-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 80357-80784 bp]: array | spacers
           [Locus range 81387-81811 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVKZ01000076.1 Clostridioides difficile Y215 gcdY215.contig.75, whole genome shotgun sequence

⇒Summary: seq-len = 146330 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125395-136672 bp Zoom in on locus 1 x27 CRISPR array Location: 125395-127134 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 125395-127134 bp Num of repeats: 27 Spacers: s1-s26 Gene: cd09725:cas2 Type: universal Location: 127318-127584 bp Gene: cd09722:cas1 Type: universal Location: 127587-128567 bp Gene: pfam01930:cas4 Type: Type-I Location: 128570-129088 bp Gene: COG1203:cas3 Type: Type-I Location: 129136-131457 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 131468-132169 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132171-133085 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133087-134937 bp Gene: pfam01881:cas6 Type: other Location: 134943-135737 bp Gene: pfam13280:WYL Type: other Location: 135758-136672 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125395-127134 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVKZ01000034.1 Clostridioides difficile Y215 gcdY215.contig.33, whole genome shotgun sequence

⇒Summary: seq-len = 95225 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86249-87463 bp Zoom in on locus 1 x19 CRISPR array Location: 86249-87463 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 86249-87463 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86249-87463 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVKZ01000054.1 Clostridioides difficile Y215 gcdY215.contig.53, whole genome shotgun sequence

⇒Summary: seq-len = 26619 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1047-1208 bp Zoom in on locus 1 x3 CRISPR array Location: 1047-1208 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1047-1208 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1047-1208 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVKZ01000066.1 Clostridioides difficile Y215 gcdY215.contig.65, whole genome shotgun sequence

⇒Summary: seq-len = 90248 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86288-87043 bp Zoom in on locus 1 x12 CRISPR array Location: 86288-87043 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 86288-87043 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86288-87043 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)