CRISPRone

CRISPRone report for GCA_000451285.2_ASM45128v2

♦ Seq 1: AVHM01000160.1 Clostridioides difficile CD111 gcdCD111.contig.167, whole genome shotgun sequence

⇒Summary: seq-len = 8876 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4692-5308 bp Zoom in on locus 1 x10 CRISPR array Location: 4692-5308 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 4692-5308 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4692-5308 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVHM01000167.1 Clostridioides difficile CD111 gcdCD111.contig.174, whole genome shotgun sequence

⇒Summary: seq-len = 48485 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3928-4285 bp Zoom in on locus 1 x6 CRISPR array Location: 3928-4285 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 3928-4285 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3928-4285 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVHM01000073.1 Clostridioides difficile CD111 gcdCD111.contig.79, whole genome shotgun sequence

⇒Summary: seq-len = 3557 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 600-2852 bp Zoom in on locus 1 x7 x4 CRISPR array Location: 600-1024 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 600-1024 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 2628-2852 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 2628-2852 bp Num of repeats: 4 Spacers: s7-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 600-1024 bp]: array | spacers
           [Locus range 2628-2852 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVHM01000233.1 Clostridioides difficile CD111 gcdCD111.contig.241, whole genome shotgun sequence

⇒Summary: seq-len = 13290 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2357-4464 bp Zoom in on locus 1 x4 x3 CRISPR array Location: 2357-2582 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 2357-2582 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 4303-4464 bp Num of repeats: 3 Spacers: s4-s5 CRISPR array Location: 4303-4464 bp Num of repeats: 3 Spacers: s4-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2357-2582 bp]: array | spacers
           [Locus range 4303-4464 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVHM01000183.1 Clostridioides difficile CD111 gcdCD111.contig.190, whole genome shotgun sequence

⇒Summary: seq-len = 27845 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7280-18220 bp Zoom in on locus 1 x22 CRISPR array Location: 7280-8682 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 7280-8682 bp Num of repeats: 22 Spacers: s1-s21 Gene: cd09725:cas2 Type: universal Location: 8866-9132 bp Gene: cd09722:cas1 Type: universal Location: 9135-10115 bp Gene: pfam01930:cas4 Type: Type-I Location: 10118-10636 bp Gene: COG1203:cas3 Type: Type-I Location: 10684-13005 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 13016-13717 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13719-14633 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 14635-16485 bp Gene: pfam01881:cas6 Type: other Location: 16491-17285 bp Gene: pfam13280:WYL Type: other Location: 17306-18220 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7280-8682 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVHM01000082.1 Clostridioides difficile CD111 gcdCD111.contig.88, whole genome shotgun sequence

⇒Summary: seq-len = 66406 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59039-60121 bp Zoom in on locus 1 x17 CRISPR array Location: 59039-60121 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 59039-60121 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 59039-60121 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVHM01000164.1 Clostridioides difficile CD111 gcdCD111.contig.171, whole genome shotgun sequence

⇒Summary: seq-len = 35117 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28272-34773 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 28272-30680 bp Gene: cd09693:cas5 Type: Type-I Location: 30707-31504 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31520-32536 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32556-34031 bp Gene: pfam01881:cas6 Type: other Location: 34036-34773 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVHM01000074.1 Clostridioides difficile CD111 gcdCD111.contig.80, whole genome shotgun sequence

⇒Summary: seq-len = 5180 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 725-1611 bp Zoom in on locus 1 x14 CRISPR array Location: 725-1611 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 725-1611 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 725-1611 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVHM01000131.1 Clostridioides difficile CD111 gcdCD111.contig.137, whole genome shotgun sequence

⇒Summary: seq-len = 4191 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2023-2183 bp Zoom in on locus 1 x3 CRISPR array Location: 2023-2183 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2023-2183 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2023-2183 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVHM01000104.1 Clostridioides difficile CD111 gcdCD111.contig.110, whole genome shotgun sequence

⇒Summary: seq-len = 5069 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3713-4863 bp Zoom in on locus 1 x18 CRISPR array Location: 3713-4863 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 3713-4863 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3713-4863 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVHM01000094.1 Clostridioides difficile CD111 gcdCD111.contig.100, whole genome shotgun sequence

⇒Summary: seq-len = 14069 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3054-3545 bp Zoom in on locus 1 x8 CRISPR array Location: 3054-3545 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3054-3545 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3054-3545 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: AVHM01000087.1 Clostridioides difficile CD111 gcdCD111.contig.93, whole genome shotgun sequence

⇒Summary: seq-len = 51205 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44773-45266 bp Zoom in on locus 1 x8 CRISPR array Location: 44773-45266 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 44773-45266 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44773-45266 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: AVHM01000192.1 Clostridioides difficile CD111 gcdCD111.contig.199, whole genome shotgun sequence

⇒Summary: seq-len = 23435 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8692-8785 bp Zoom in on locus 1 x2 CRISPR array Location: 8692-8785 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 8692-8785 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8692-8785 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)