CRISPRone

CRISPRone report for GCA_000451365.2_ASM45136v2

♦ Seq 1: AVKV01000279.1 Clostridioides difficile Y165 gcdY165.contig.290, whole genome shotgun sequence

⇒Summary: seq-len = 48253 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3928-4285 bp Zoom in on locus 1 x6 CRISPR array Location: 3928-4285 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 3928-4285 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3928-4285 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVKV01000160.1 Clostridioides difficile Y165 gcdY165.contig.170, whole genome shotgun sequence

⇒Summary: seq-len = 31148 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24783-25276 bp Zoom in on locus 1 x8 CRISPR array Location: 24783-25276 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 24783-25276 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 24783-25276 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVKV01000171.1 Clostridioides difficile Y165 gcdY165.contig.181, whole genome shotgun sequence

⇒Summary: seq-len = 27931 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3046-3537 bp Zoom in on locus 1 x8 CRISPR array Location: 3046-3537 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3046-3537 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3046-3537 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVKV01000320.1 Clostridioides difficile Y165 gcdY165.contig.331, whole genome shotgun sequence

⇒Summary: seq-len = 27965 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7315-18386 bp Zoom in on locus 1 x24 CRISPR array Location: 7315-8848 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 7315-8848 bp Num of repeats: 24 Spacers: s1-s23 Gene: cd09725:cas2 Type: universal Location: 9032-9298 bp Gene: cd09722:cas1 Type: universal Location: 9301-10281 bp Gene: pfam01930:cas4 Type: Type-I Location: 10284-10802 bp Gene: COG1203:cas3 Type: Type-I Location: 10850-13171 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 13182-13883 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13885-14799 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 14801-16651 bp Gene: pfam01881:cas6 Type: other Location: 16657-17451 bp Gene: pfam13280:WYL Type: other Location: 17472-18386 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7315-8848 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVKV01000310.1 Clostridioides difficile Y165 gcdY165.contig.321, whole genome shotgun sequence

⇒Summary: seq-len = 12750 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7236-12166 bp Zoom in on locus 1 x14 x4 x7 CRISPR array Location: 7236-8121 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 7236-8121 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 9915-10138 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 9915-10138 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 11743-12166 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 11743-12166 bp Num of repeats: 7 Spacers: s17-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7236-8121 bp]: array | spacers
           [Locus range 9915-10138 bp]: array | spacers
           [Locus range 11743-12166 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVKV01000221.1 Clostridioides difficile Y165 gcdY165.contig.232, whole genome shotgun sequence

⇒Summary: seq-len = 11609 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2006-2166 bp Zoom in on locus 1 x3 CRISPR array Location: 2006-2166 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2006-2166 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2006-2166 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVKV01000148.1 Clostridioides difficile Y165 gcdY165.contig.158, whole genome shotgun sequence

⇒Summary: seq-len = 52994 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45609-46691 bp Zoom in on locus 1 x17 CRISPR array Location: 45609-46691 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 45609-46691 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45609-46691 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVKV01000125.1 Clostridioides difficile Y165 gcdY165.contig.134, whole genome shotgun sequence

⇒Summary: seq-len = 24706 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22119-22605 bp Zoom in on locus 1 x8 CRISPR array Location: 22119-22605 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 22119-22605 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22119-22605 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVKV01000262.1 Clostridioides difficile Y165 gcdY165.contig.273, whole genome shotgun sequence

⇒Summary: seq-len = 9341 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5943-6234 bp Zoom in on locus 1 x5 CRISPR array Location: 5943-6234 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 5943-6234 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5943-6234 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVKV01000275.1 Clostridioides difficile Y165 gcdY165.contig.286, whole genome shotgun sequence

⇒Summary: seq-len = 35263 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28399-34900 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 28399-30807 bp Gene: cd09693:cas5 Type: Type-I Location: 30834-31631 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31647-32663 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32683-34158 bp Gene: pfam01881:cas6 Type: other Location: 34163-34900 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVKV01000330.1 Clostridioides difficile Y165 gcdY165.contig.341, whole genome shotgun sequence

⇒Summary: seq-len = 17935 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8540-8633 bp Zoom in on locus 1 x2 CRISPR array Location: 8540-8633 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 8540-8633 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8540-8633 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: AVKV01000184.1 Clostridioides difficile Y165 gcdY165.contig.195, whole genome shotgun sequence

⇒Summary: seq-len = 3186 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1940-3025 bp Zoom in on locus 1 x17 CRISPR array Location: 1940-3025 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 1940-3025 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1940-3025 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)