CRISPRone

CRISPRone report for GCA_000451385.2_ASM45138v2

♦ Seq 1: AVLD01000023.1 Clostridioides difficile Y270 gcdY270.contig.23, whole genome shotgun sequence

⇒Summary: seq-len = 55637 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44901-45195 bp Zoom in on locus 1 x5 CRISPR array Location: 44901-45195 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 44901-45195 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44901-45195 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVLD01000033.1 Clostridioides difficile Y270 gcdY270.contig.33, whole genome shotgun sequence

⇒Summary: seq-len = 238961 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 158377-166233 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 158377-160785 bp Gene: cd09693:cas5 Type: Type-I Location: 160812-161609 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 161625-162638 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 162658-164124 bp Gene: pfam01881:cas6 Type: other Location: 164129-164866 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 165124-166233 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVLD01000026.1 Clostridioides difficile Y270 gcdY270.contig.26, whole genome shotgun sequence

⇒Summary: seq-len = 118995 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60769-61916 bp Zoom in on locus 1 x18 CRISPR array Location: 60769-61916 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 60769-61916 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 60769-61916 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVLD01000037.1 Clostridioides difficile Y270 gcdY270.contig.37, whole genome shotgun sequence

⇒Summary: seq-len = 351760 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252422-263088 bp Zoom in on locus 1 x18 CRISPR array Location: 252422-253550 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 252422-253550 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09725:cas2 Type: universal Location: 253734-254000 bp Gene: cd09722:cas1 Type: universal Location: 254003-254983 bp Gene: pfam01930:cas4 Type: Type-I Location: 254986-255504 bp Gene: cd09641:cas3HD Type: Type-I Location: 255552-257873 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 257884-258585 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 258587-259501 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 259503-261353 bp Gene: pfam01881:cas6 Type: other Location: 261359-262153 bp Gene: pfam13280:WYL Type: other Location: 262174-263088 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252422-253550 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVLD01000029.1 Clostridioides difficile Y270 gcdY270.contig.29, whole genome shotgun sequence

⇒Summary: seq-len = 74630 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27504-29643 bp Zoom in on locus 1 x33 CRISPR array Location: 27504-29643 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 27504-29643 bp Num of repeats: 33 Spacers: s1-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 27504-29643 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVLD01000040.1 Clostridioides difficile Y270 gcdY270.contig.40, whole genome shotgun sequence

⇒Summary: seq-len = 6595 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1215-5261 bp Zoom in on locus 1 x11 x9 CRISPR array Location: 1215-1901 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 1215-1901 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 4707-5261 bp Num of repeats: 9 Spacers: s11-s18 CRISPR array Location: 4707-5261 bp Num of repeats: 9 Spacers: s11-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1215-1901 bp]: array | spacers
           [Locus range 4707-5261 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVLD01000035.1 Clostridioides difficile Y270 gcdY270.contig.35, whole genome shotgun sequence

⇒Summary: seq-len = 2930 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2031-2125 bp Zoom in on locus 1 x2 CRISPR array Location: 2031-2125 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 2031-2125 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2031-2125 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVLD01000017.1 Clostridioides difficile Y270 gcdY270.contig.17, whole genome shotgun sequence

⇒Summary: seq-len = 5551 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 466-998 bp Zoom in on locus 1 x4 x3 CRISPR array Location: 466-693 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 466-693 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 837-998 bp Num of repeats: 3 Spacers: s4-s5 CRISPR array Location: 837-998 bp Num of repeats: 3 Spacers: s4-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 466-693 bp]: array | spacers
           [Locus range 837-998 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVLD01000053.1 Clostridioides difficile Y270 gcdY270.contig.54, whole genome shotgun sequence

⇒Summary: seq-len = 8492 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 266-753 bp Zoom in on locus 1 x8 CRISPR array Location: 266-753 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 266-753 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 266-753 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVLD01000028.1 Clostridioides difficile Y270 gcdY270.contig.28, whole genome shotgun sequence

⇒Summary: seq-len = 36629 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 588-811 bp Zoom in on locus 1 x4 CRISPR array Location: 588-811 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 588-811 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 588-811 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVLD01000032.1 Clostridioides difficile Y270 gcdY270.contig.32, whole genome shotgun sequence

⇒Summary: seq-len = 4997 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1537-1895 bp Zoom in on locus 1 x6 CRISPR array Location: 1537-1895 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1537-1895 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1537-1895 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)