CRISPRone

CRISPRone report for GCA_000451405.2_ASM45140v2

♦ Seq 1: AVLF01000058.1 Clostridioides difficile Y312 gcdY312.contig.57, whole genome shotgun sequence

⇒Summary: seq-len = 74199 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22132-22553 bp Zoom in on locus 1 x7 CRISPR array Location: 22132-22553 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 22132-22553 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 22132-22553 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVLF01000085.1 Clostridioides difficile Y312 gcdY312.contig.84, whole genome shotgun sequence

⇒Summary: seq-len = 2697 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 413-574 bp Zoom in on locus 1 x3 CRISPR array Location: 413-574 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 413-574 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 413-574 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVLF01000117.1 Clostridioides difficile Y312 gcdY312.contig.116, whole genome shotgun sequence

⇒Summary: seq-len = 54817 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132-689 bp Zoom in on locus 1 x9 CRISPR array Location: 132-689 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 132-689 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 132-689 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVLF01000049.1 Clostridioides difficile Y312 gcdY312.contig.48, whole genome shotgun sequence

⇒Summary: seq-len = 137541 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 130933-131226 bp Zoom in on locus 1 x5 CRISPR array Location: 130933-131226 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 130933-131226 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 130933-131226 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVLF01000073.1 Clostridioides difficile Y312 gcdY312.contig.72, whole genome shotgun sequence

⇒Summary: seq-len = 33897 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2314-2675 bp Zoom in on locus 1 x6 CRISPR array Location: 2314-2675 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 2314-2675 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2314-2675 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVLF01000065.1 Clostridioides difficile Y312 gcdY312.contig.64, whole genome shotgun sequence

⇒Summary: seq-len = 13791 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3109-3336 bp Zoom in on locus 1 x4 CRISPR array Location: 3109-3336 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3109-3336 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3109-3336 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVLF01000158.1 Clostridioides difficile Y312 gcdY312.contig.157, whole genome shotgun sequence

⇒Summary: seq-len = 12422 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 262-12318 bp Zoom in on locus 1 x46 Gene: cd09725:cas2 Type: universal Location: 262-552 bp Gene: cd09722:cas1 Type: universal Location: 763-1770 bp Gene: pfam01930:cas4 Type: Type-I Location: 1796-2290 bp CRISPR array Location: 2375-5376 bp Num of repeats: 46 Spacers: s1-s45 CRISPR array Location: 2375-5376 bp Num of repeats: 46 Spacers: s1-s45 Gene: cd09641:cas3HD Type: Type-I Location: 5566-8124 bp Gene: cd09693:cas5 Type: Type-I Location: 8148-8888 bp Gene: pfam05107:cas7b Type: Type-I Location: 8890-9879 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 9872-11611 bp Gene: cd09652:cas6 Type: other Location: 11623-12318 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2375-5376 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVLF01000114.1 Clostridioides difficile Y312 gcdY312.contig.113, whole genome shotgun sequence

⇒Summary: seq-len = 118994 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60807-68672 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 60807-63215 bp Gene: cd09693:cas5 Type: Type-I Location: 63242-64039 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 64055-65068 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 65088-66563 bp Gene: pfam01881:cas6 Type: other Location: 66568-67305 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 67563-68672 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVLF01000130.1 Clostridioides difficile Y312 gcdY312.contig.129, whole genome shotgun sequence

⇒Summary: seq-len = 78122 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11085-14435 bp Zoom in on locus 1 x12 x5 CRISPR array Location: 11085-11841 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 11085-11841 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 14145-14435 bp Num of repeats: 5 Spacers: s12-s15 CRISPR array Location: 14145-14435 bp Num of repeats: 5 Spacers: s12-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11085-11841 bp]: array | spacers
           [Locus range 14145-14435 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVLF01000109.1 Clostridioides difficile Y312 gcdY312.contig.108, whole genome shotgun sequence

⇒Summary: seq-len = 9391 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5415-6165 bp Zoom in on locus 1 x12 CRISPR array Location: 5415-6165 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 5415-6165 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5415-6165 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)