CRISPRone

CRISPRone report for GCA_000451445.2_ASM45144v2

♦ Seq 1: AVKW01000155.1 Clostridioides difficile Y171 gcdY171.contig.154, whole genome shotgun sequence

⇒Summary: seq-len = 2690 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1159-1320 bp Zoom in on locus 1 x3 CRISPR array Location: 1159-1320 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1159-1320 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1159-1320 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVKW01000004.1 Clostridioides difficile Y171 gcdY171.contig.3, whole genome shotgun sequence

⇒Summary: seq-len = 11016 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-10808 bp Zoom in on locus 1 x46 Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 2-1198 bp Gene: pfam05107:cas7b Type: Type-I Location: 1191-2180 bp Gene: cd09693:cas5 Type: Type-I Location: 2182-2922 bp Gene: cd09641:cas3HD Type: Type-I Location: 2946-5504 bp CRISPR array Location: 5694-8696 bp Num of repeats: 46 Spacers: s1-s45 CRISPR array Location: 5694-8696 bp Num of repeats: 46 Spacers: s1-s45 Gene: pfam01930:cas4 Type: Type-I Location: 8780-9274 bp Gene: cd09722:cas1 Type: universal Location: 9300-10307 bp Gene: cd09725:cas2 Type: universal Location: 10518-10808 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 5694-8696 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVKW01000200.1 Clostridioides difficile Y171 gcdY171.contig.199, whole genome shotgun sequence

⇒Summary: seq-len = 53894 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33807-41672 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 33807-36215 bp Gene: cd09693:cas5 Type: Type-I Location: 36242-37039 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 37055-38068 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 38088-39563 bp Gene: pfam01881:cas6 Type: other Location: 39568-40305 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 40563-41672 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVKW01000110.1 Clostridioides difficile Y171 gcdY171.contig.109, whole genome shotgun sequence

⇒Summary: seq-len = 12003 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3068-3295 bp Zoom in on locus 1 x4 CRISPR array Location: 3068-3295 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3068-3295 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3068-3295 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVKW01000005.1 Clostridioides difficile Y171 gcdY171.contig.4, whole genome shotgun sequence

⇒Summary: seq-len = 1301 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-1200 bp Zoom in on locus 1 Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 2-493 bp Gene: cd09652:cas6 Type: other Location: 505-1200 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVKW01000099.1 Clostridioides difficile Y171 gcdY171.contig.98, whole genome shotgun sequence

⇒Summary: seq-len = 83351 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 76989-77410 bp Zoom in on locus 1 x7 CRISPR array Location: 76989-77410 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 76989-77410 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 76989-77410 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVKW01000191.1 Clostridioides difficile Y171 gcdY171.contig.190, whole genome shotgun sequence

⇒Summary: seq-len = 8794 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4718-5468 bp Zoom in on locus 1 x12 CRISPR array Location: 4718-5468 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 4718-5468 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4718-5468 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVKW01000121.1 Clostridioides difficile Y171 gcdY171.contig.120, whole genome shotgun sequence

⇒Summary: seq-len = 2430 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1928-2289 bp Zoom in on locus 1 x6 CRISPR array Location: 1928-2289 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1928-2289 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1928-2289 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVKW01000204.1 Clostridioides difficile Y171 gcdY171.contig.203, whole genome shotgun sequence

⇒Summary: seq-len = 54762 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 130-687 bp Zoom in on locus 1 x9 CRISPR array Location: 130-687 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 130-687 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 130-687 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)