CRISPRone

CRISPRone report for GCA_000451465.2_ASM45146v2

♦ Seq 1: AVKD01000357.1 Clostridioides difficile DA00256 gcdDA00256.contig.359, whole genome shotgun sequence

⇒Summary: seq-len = 5249 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3801-3961 bp Zoom in on locus 1 x3 CRISPR array Location: 3801-3961 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 3801-3961 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3801-3961 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: AVKD01000220.1 Clostridioides difficile DA00256 gcdDA00256.contig.221, whole genome shotgun sequence

⇒Summary: seq-len = 2367 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1890-2378 bp Zoom in on locus 1 x8 CRISPR array Location: 1890-2378 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 1890-2378 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1890-2378 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: AVKD01000440.1 Clostridioides difficile DA00256 gcdDA00256.contig.442, whole genome shotgun sequence

⇒Summary: seq-len = 13077 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1883-12890 bp Zoom in on locus 1 x23 CRISPR array Location: 1883-3352 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 1883-3352 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09725:cas2 Type: universal Location: 3536-3802 bp Gene: cd09722:cas1 Type: universal Location: 3805-4785 bp Gene: pfam01930:cas4 Type: Type-I Location: 4788-5306 bp Gene: COG1203:cas3 Type: Type-I Location: 5354-7675 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 7686-8387 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 8389-9303 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 9305-11155 bp Gene: pfam01881:cas6 Type: other Location: 11161-11955 bp Gene: pfam13280:WYL Type: other Location: 11976-12890 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1883-3352 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: AVKD01000375.1 Clostridioides difficile DA00256 gcdDA00256.contig.377, whole genome shotgun sequence

⇒Summary: seq-len = 24304 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19485-23749 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 19485-21893 bp Gene: cd09693:cas5 Type: Type-I Location: 21920-22717 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 22733-23749 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: AVKD01000461.1 Clostridioides difficile DA00256 gcdDA00256.contig.463, whole genome shotgun sequence

⇒Summary: seq-len = 17903 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8662-8755 bp Zoom in on locus 1 x2 CRISPR array Location: 8662-8755 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 8662-8755 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8662-8755 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: AVKD01000356.1 Clostridioides difficile DA00256 gcdDA00256.contig.358, whole genome shotgun sequence

⇒Summary: seq-len = 4960 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1042-1658 bp Zoom in on locus 1 x10 CRISPR array Location: 1042-1658 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 1042-1658 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1042-1658 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: AVKD01000117.1 Clostridioides difficile DA00256 gcdDA00256.contig.117, whole genome shotgun sequence

⇒Summary: seq-len = 9657 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 293-652 bp Zoom in on locus 1 x6 CRISPR array Location: 293-652 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 293-652 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 293-652 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: AVKD01000176.1 Clostridioides difficile DA00256 gcdDA00256.contig.176, whole genome shotgun sequence

⇒Summary: seq-len = 4198 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1383-1876 bp Zoom in on locus 1 x8 CRISPR array Location: 1383-1876 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 1383-1876 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1383-1876 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: AVKD01000116.1 Clostridioides difficile DA00256 gcdDA00256.contig.116, whole genome shotgun sequence

⇒Summary: seq-len = 2070 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1615-1973 bp Zoom in on locus 1 x6 CRISPR array Location: 1615-1973 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1615-1973 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1615-1973 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: AVKD01000355.1 Clostridioides difficile DA00256 gcdDA00256.contig.357, whole genome shotgun sequence

⇒Summary: seq-len = 22439 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1512-3861 bp Zoom in on locus 1 x4 x6 CRISPR array Location: 1512-1735 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1512-1735 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3505-3861 bp Num of repeats: 6 Spacers: s4-s8 CRISPR array Location: 3505-3861 bp Num of repeats: 6 Spacers: s4-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1512-1735 bp]: array | spacers
           [Locus range 3505-3861 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: AVKD01000383.1 Clostridioides difficile DA00256 gcdDA00256.contig.385, whole genome shotgun sequence

⇒Summary: seq-len = 4498 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3921-4278 bp Zoom in on locus 1 x6 CRISPR array Location: 3921-4278 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 3921-4278 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3921-4278 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: AVKD01000195.1 Clostridioides difficile DA00256 gcdDA00256.contig.195, whole genome shotgun sequence

⇒Summary: seq-len = 9219 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10-501 bp Zoom in on locus 1 x8 CRISPR array Location: 10-501 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 10-501 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10-501 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: AVKD01000148.1 Clostridioides difficile DA00256 gcdDA00256.contig.148, whole genome shotgun sequence

⇒Summary: seq-len = 2437 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1384-2402 bp Zoom in on locus 1 x16 CRISPR array Location: 1384-2402 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 1384-2402 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1384-2402 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)